Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38600 322 / 1e-112 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT4G29260 197 / 2e-63 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT4G29270 196 / 6e-63 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT4G25150 187 / 4e-59 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G51260 182 / 2e-57 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT1G04040 161 / 4e-49 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G44020 160 / 9e-49 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G24780 143 / 6e-42 ATVSP1, ATVSP, VSP1 vegetative storage protein 1 (.1.2) AT5G24770 140 / 8e-41 ATVSP2, VSP2 vegetative storage protein 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G139700 [exp] 397 / 3e-142 AT2G38600 347 / 1e-121 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.001G191000 [exp] 212 / 6e-69 AT4G25150 259 / 8e-87 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.004G232900 [exp] 190 / 2e-60 AT5G51260 346 / 3e-121 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.006G152900 [exp] 184 / 4e-58 AT4G29260 292 / 3e-100 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.002G257700 [exp] 172 / 2e-53 AT1G04040 317 / 1e-109 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.010G066500 [exp] 155 / 1e-46 AT1G04040 285 / 5e-97 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.010G193500 [exp] 83 / 1e-18 AT2G39920 195 / 1e-60 HAD superfamily, subfamily IIIB acid phosphatase (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017060 [exp] 235 / 2e-79 AT2G38600 216 / 2e-71 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10013478 [exp] 177 / 2e-55 AT4G25150 301 / 1e-103 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10007939 [exp] 177 / 3e-55 AT4G25150 300 / 5e-103 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10011140 [exp] 171 / 6e-53 AT4G29270 251 / 8e-84 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10043042 [exp] 169 / 3e-52 AT4G29270 251 / 7e-84 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10011774 [exp] 157 / 1e-47 AT1G04040 272 / 8e-92 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10023731 [exp] 156 / 3e-47 AT1G04040 273 / 3e-92 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10014968 [exp] 145 / 1e-42 AT4G29260 231 / 1e-75 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10006849 [exp] 103 / 4e-28 AT4G25150 121 / 9e-35 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10021379 [exp] 89 / 3e-21 AT3G52820 97 / 2e-24 purple acid phosphatase 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF03767 [poplar] [flax] Acid_phosphat_B HAD superfamily, subfamily IIIB (Acid phosphatase)
Representative CDS sequence Show only first row Show all	>Potri.006G110900.3 pacid=42770628 polypeptide=Potri.006G110900.3.p locus=Potri.006G110900 ID=Potri.006G110900.3.v4.1 annot-version=v4.1 ATGATACCAGAAGGCGCTTCCTATTATCTGAGCTGGAGGTTGGATGTGGAGGCTAACAATGTGCGTGCGTGGCGCACGGTCCCTTCTCAATGCTTGAGGT ACGTTGAAGCTTACATGCGTGGAGGACAGTATGACAGGGACCTTGACTTGATTGTTGACCAAGTTTTGAGTTATATTAATGAGATAGATCCCTCCAATGA TGGCATGGATGCTTGGATCCTAGATGTTGACGACACCTGCATCTCTAATCTCCTCTACTACAGGGAAAAGAGATATGGGTGTGACCCATTCGATCCAGCT GGTTTCAAGGCATGGGCATTAAAGGGAGGATGCCAAGCAATTCCTGCTGTTCTTGGATTGTTTAACAACCTGGTTCAAAATGGTTTTAAAGTATTCCTGA TCACTGGAAGGGACCAGGAAACACTTGGCCAAGTCACTAGTGATAATCTGCATGATCAGGGCTTCATCGGCTATGAGCGACTAATCTTGAAGACGGCAGG ATTCAAAGGACAAAACGCTTTGGCATACAAGTCAGAAATAAGAAGGCGATTAGAAAAGGAAGGTTACAGGATATGGGGGAACGTTGGTGACCAATGGAGT GATCTGCAAGGAGAGTGTTTGGGGAACCGCACTTTCAAGCTACCAAATCTAATGTATTTTGTTCCCTGA
AA sequence Show only first row Show all	>Potri.006G110900.3 pacid=42770628 polypeptide=Potri.006G110900.3.p locus=Potri.006G110900 ID=Potri.006G110900.3.v4.1 annot-version=v4.1 MIPEGASYYLSWRLDVEANNVRAWRTVPSQCLRYVEAYMRGGQYDRDLDLIVDQVLSYINEIDPSNDGMDAWILDVDDTCISNLLYYREKRYGCDPFDPA GFKAWALKGGCQAIPAVLGLFNNLVQNGFKVFLITGRDQETLGQVTSDNLHDQGFIGYERLILKTAGFKGQNALAYKSEIRRRLEKEGYRIWGNVGDQWS DLQGECLGNRTFKLPNLMYFVP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38600			HAD superfamily, subfamily III...		Potri.006G110900 [exp]	0	1
AT1G31130			unknown protein		Potri.002G074200 [exp]	18.97	0.9032
					Potri.014G013000 [exp]	23.57	0.9248
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.002G219600 [exp]	25.15	0.9081	PLIN-GEN.22
AT4G27740			Yippee family putative zinc-bi...		Potri.012G019200 [exp]	34.85	0.8955
AT1G76150		ECH2, ATECH2	enoyl-CoA hydratase 2 (.1)		Potri.005G247600 [exp]	40.02	0.8307
AT2G23570		ATMES19	ARABIDOPSIS THALIANA METHYL ES...		Potri.007G037401 [exp]	54.84	0.8930
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.014G033550 [exp]	64.58	0.8785
AT1G14550			Peroxidase superfamily protein...		Potri.010G236910 [exp]	72.66	0.8402
AT1G76490		HMGR1, HMG1, At...	3-HYDROXY-3-METHYLGLUTARYL COA...		Potri.009G169900 [exp]	111.96	0.8505
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.003G098900 [exp]	113.41	0.8500

Compare expression of checked genes

Potri.006G110900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.