Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01950 1052 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G06840 1004 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G37450 778 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G53590 683 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G79620 444 / 1e-140 Leucine-rich repeat protein kinase family protein (.1) AT5G49770 402 / 4e-125 Leucine-rich repeat protein kinase family protein (.1) AT5G49760 395 / 2e-122 Leucine-rich repeat protein kinase family protein (.1) AT5G49780 340 / 1e-102 Leucine-rich repeat protein kinase family protein (.1) AT3G24550 228 / 9e-64 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT3G24790 219 / 2e-63 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G140300 [exp] 1508 / 0 AT5G01950 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G140200 [exp] 1280 / 0 AT5G01950 1018 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G131800 [exp] 1030 / 0 AT1G06840 1092 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G159500 [exp] 1024 / 0 AT1G06840 1102 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G159200 [exp] 1013 / 0 AT1G06840 1040 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G140101 [exp] 1003 / 0 AT1G06840 1001 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G144100 [exp] 442 / 8e-140 AT1G79620 1380 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231700 [exp] 436 / 2e-137 AT5G49760 1031 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G114400 [exp] 428 / 2e-134 AT1G79620 1295 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035605 [exp] 1188 / 0 AT5G01950 1126 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10003244 [exp] 1059 / 0 AT5G01950 1039 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019114 [exp] 1038 / 0 AT1G06840 1288 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034445 [exp] 1030 / 0 AT1G06840 1274 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004061 [exp] 670 / 0 AT5G01950 766 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10002278 [exp] 632 / 0 AT5G37450 722 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10012159 [exp] 428 / 7e-134 AT5G49760 1058 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10007587 [exp] 352 / 2e-106 AT5G49760 956 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021003 [exp] 270 / 1e-80 AT1G79620 549 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023848 [exp] 255 / 7e-76 AT1G79620 431 / 5e-143 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.006G111100.1 pacid=42768078 polypeptide=Potri.006G111100.1.p locus=Potri.006G111100 ID=Potri.006G111100.1.v4.1 annot-version=v4.1 ATGTTGCAGCTGAGAACTTGTGAATGTGTTTTTGTGCTGTCATATTGTTACTTGGTGCTACTCACGGTTGCTCAAGTTTCAAGTCCCTCAGAAGTTAATG CATTGCTAGCAGTCAAGAACAGTTTGATTGATCCTATGAAGCATCTCAGTAATTGGAACAAGGGAGATCCATGTGCCTTCAATTGGACTGGTGTTTTTTG TTCTGACTCAACTGGGACTGATGGTTACTTGCATGTGCAAGAGCTTCAGCTTATGAATATGAATCTTTCTGGATCTTTAGCACCTGAGCTTGGCCAGCTT TCTCAACTGAAAATATTGGATTTTATGTGGAATGAATTGACTGGCAGCATACCAAGAGAGATAGGAAGTCTTTCATCTTTGAAACTCCTGCTCTTGAATG GAAACAAATTATCAGGCTCTTTACCTGATGAGTTAAGCTATTTATCAAAACTAGATAGACTTCAAGTAGATCAGAACAACATTTCAGGACCACTACCAAA ATCATTTGCTAACATGAGCAGTGTTAGACACCTCCACTTGAATAACAACTCAATCAGTGGTCAAATTCCACCTGAGCTTTACAAACTATCAACTCTCTTT CACTTGCTTTTGGATAATAATAACTTATCTGGATATCTTCCACCAGAACTATCAAAGTTGCCAGAGATACGGATAATTCAACTCGACAACAACAACTTTA ACGGGTCGGGAATTCCAGCTACTTATGGCAACCTTTCCAGATTAGCAAAACTAAGTCTCAGAAATTGTAGCTTGCATGGTGCTATACCTGATCTTAGCAG CATACCAAACCTATACTATTTGGATCTGAGTGAGAACAACCTTAGTGGATCTGTACCTTCCAAACTTTCTGATTCTATGAGAACTATTGATTTGTCAGAG AACCATCTTAGTGGATCTATACCTGGAAGTTTTTCAAATCTTCCTTTTCTTCAGAGACTGTCACTTGAAAATAATCTGTTGAATGGTTCTGTGCCAACTG ACATCTGGCAGAACGTGACCTTCACTAAAAGCGCTAGACTTACAATTGATCTTAGGAACAATTCACTCTCGACCATTTCAGGGGCATTGAATCCACCAGA TAATGTCACCTTAAGGCTTGGAGGCAATCCTATTTGTAAAAGTGCAAACATAGCCAACATAACCCAGTTCTGTGGGTCTGAAGCTGGAGGAGATAGGAAT GCTGAGAGGTCAAGGAAATCTACGATGACATGTCCTGTTCAAGCATGCCCAATAGATAATTTCTTTGAATATGTCCCAGCTTCACCTCTACCATGCTTTT GTGCCTCCCCTCTAAAAGTTGGATATAGACTTAAAAGCCCCAGTTTCTCTTATTTTGATCCATATGTTCTTCCATTTGAGTTATATGTGACTAGTTCTCT TAACCTGAACCCTTATCAACTCGCAATCGATTCCTATTTCTGGGAAGAAGGCCCTCGTCTAAGGATGCATTTAAATCTTTTTCCTCCAGCTAATAATATG CACTCCAACACATTTAATGTATCCGAGGTTCGGCGAATAAGAGGTATATTCACATCATGGCAGTTTCCTGGTGACGGTTTCTTTGGACCGTATGAACTTC TCAACTTCACTCTAGTGGGACCTTATGCAGGGATGCACTTCGACCGAAAAGGAAAGAGTATCAGCAAAGGAGTTTTGGTAGCCATTATATTAGGTGCTAT TGCCTGTGCCATTGCAATATCTTCAGTTCTCACATTTCTTATTGCAGGAAGATATGCTAGAAACCTTAGAAAGCTGTCAAGAAGACATTTATCATCCAAG GCATCCATGAAAATTGATGGTGTGAAAGGCTTCACTTTTAAGGAAATGGCCCTGGCTACTGACAACTTCAACAGCTCAACTCAAGTTGGTCGAGGAGGTT ATGGAAAGGTTTATAGAGGCATTCTTTCTGATAACTCAATTGTGGCCATAAAGCGTTCTGAAGAAGGATCATTACAAGGCCAAAAAGAATTTTTGACTGA GATTAAATTGCTGTCGAGGTTGCATCACAGAAATCTAGTTTCACTGGTTGGATATTGTGATGAAGAGGAGCAGATGCTTGTGTACGAGTTCATGCCAAAT GGTACCTTGCGGGACTGGCTTTCTGATAAGGGTAAGGGAACTTTGAAATTTGGTACAAGGTTAAGCATTGCGTTGGGTTCAGCTAAGGGAATTCTTTACC TCCATACCGAAGCACAGCCTCCAGTATTCCACCGGGATATCAAGGCCACTAACATACTCCTGGACTCTATACTTAATGCTAAAGTTGCTGACTTTGGACT CTCACTTCTTGCTCCTGTGCTGGATGATGAAGGGAATCTTCCTAATCATGTATCAACAGTAGTAAGGGGAACTCCAGGATACCTTGATCCAGAATATTTT TTGACCCATAAGTTGACGGACAAGAGTGATGTCTATAGCCTCGGGATTGTGTTTTTGGAGCTCCTGACTGGCATGCAGCCAATATCACATGGCAAAAACA TTGTTCGTGAGGTAAACATGGCTTATCAGTCAGGCATTATGTTCTCTATCATAGACAACAGAATGGGTGCTTATCCATCTGAATGTGTGGAGAGATTTGT GGTTTTGGCACTCGACTGTTGCCATGACAAGCAAGACAAGCGACCGTCAATGCAGGATGTGGTCAGGGAACTGGAAACCATACTCAAAATGATGCCAGAA ACTGATGCCATCTATACAGAATCCACTCCCACATATTCTGGCAAATCCACTCCCACATATTCTGGCAAGTCAGCATCATCGTCTTCATTTTACTCAAGCC GAGATCCATACGGGAGTTCAAGTCTTCTGGGAAGTGATCTTACCAGCGGTGTTGTTCCCACCATCACGCCTCACTAA
AA sequence Show only first row Show all	>Potri.006G111100.1 pacid=42768078 polypeptide=Potri.006G111100.1.p locus=Potri.006G111100 ID=Potri.006G111100.1.v4.1 annot-version=v4.1 MLQLRTCECVFVLSYCYLVLLTVAQVSSPSEVNALLAVKNSLIDPMKHLSNWNKGDPCAFNWTGVFCSDSTGTDGYLHVQELQLMNMNLSGSLAPELGQL SQLKILDFMWNELTGSIPREIGSLSSLKLLLLNGNKLSGSLPDELSYLSKLDRLQVDQNNISGPLPKSFANMSSVRHLHLNNNSISGQIPPELYKLSTLF HLLLDNNNLSGYLPPELSKLPEIRIIQLDNNNFNGSGIPATYGNLSRLAKLSLRNCSLHGAIPDLSSIPNLYYLDLSENNLSGSVPSKLSDSMRTIDLSE NHLSGSIPGSFSNLPFLQRLSLENNLLNGSVPTDIWQNVTFTKSARLTIDLRNNSLSTISGALNPPDNVTLRLGGNPICKSANIANITQFCGSEAGGDRN AERSRKSTMTCPVQACPIDNFFEYVPASPLPCFCASPLKVGYRLKSPSFSYFDPYVLPFELYVTSSLNLNPYQLAIDSYFWEEGPRLRMHLNLFPPANNM HSNTFNVSEVRRIRGIFTSWQFPGDGFFGPYELLNFTLVGPYAGMHFDRKGKSISKGVLVAIILGAIACAIAISSVLTFLIAGRYARNLRKLSRRHLSSK ASMKIDGVKGFTFKEMALATDNFNSSTQVGRGGYGKVYRGILSDNSIVAIKRSEEGSLQGQKEFLTEIKLLSRLHHRNLVSLVGYCDEEEQMLVYEFMPN GTLRDWLSDKGKGTLKFGTRLSIALGSAKGILYLHTEAQPPVFHRDIKATNILLDSILNAKVADFGLSLLAPVLDDEGNLPNHVSTVVRGTPGYLDPEYF LTHKLTDKSDVYSLGIVFLELLTGMQPISHGKNIVREVNMAYQSGIMFSIIDNRMGAYPSECVERFVVLALDCCHDKQDKRPSMQDVVRELETILKMMPE TDAIYTESTPTYSGKSTPTYSGKSASSSSFYSSRDPYGSSSLLGSDLTSGVVPTITPH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01950			Leucine-rich repeat protein ki...		Potri.006G111100 [exp]	0	1
AT4G24020		NLP7	NIN like protein 7 (.1)		Potri.001G087900 [exp]	1.00	0.9310
AT1G34300			lectin protein kinase family p...		Potri.016G102600 [exp]	7.21	0.9308
AT4G02860			Phenazine biosynthesis PhzC/Ph...		Potri.010G175700 [exp]	7.74	0.9139
AT1G56130			Leucine-rich repeat transmembr...		Potri.007G067900 [exp]	8.48	0.9273
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G284200 [exp]	8.83	0.9138
AT1G34300			lectin protein kinase family p...		Potri.016G102500 [exp]	8.94	0.9086
AT3G53480		PIS1, ABCG37, P...	polar auxin transport inhibito...		Potri.010G153700 [exp]	10.39	0.9093
AT5G24270		ATSOS3, CBL4, S...	CALCINEURIN B-LIKE PROTEIN 4, ...		Potri.015G013100 [exp]	15.68	0.8858
AT3G28960			Transmembrane amino acid trans...		Potri.010G169000 [exp]	18.02	0.9077
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Potri.018G075000 [exp]	21.63	0.9156

Compare expression of checked genes

Potri.006G111100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.