Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08640 350 / 4e-120 Protein of unknown function (DUF3411) (.1) AT3G08630 338 / 2e-115 Protein of unknown function (DUF3411) (.1) AT2G37860 92 / 3e-20 LCD1 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) AT5G12470 91 / 4e-20 Protein of unknown function (DUF3411) (.1) AT5G22790 87 / 1e-18 RER1 reticulata-related 1 (.1) AT3G56140 76 / 6e-15 Protein of unknown function (DUF399 and DUF3411) (.1) AT2G40400 74 / 3e-14 Protein of unknown function (DUF399 and DUF3411) (.1), Protein of unknown function (DUF399 and DUF3411) (.2) AT5G24690 49 / 3e-06 Protein of unknown function (DUF3411) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G140700 [exp] 437 / 7e-154 AT3G08640 357 / 5e-123 Protein of unknown function (DUF3411) (.1) Potri.009G051800 [exp] 94 / 4e-21 AT5G12470 467 / 1e-164 Protein of unknown function (DUF3411) (.1) Potri.009G150400 [exp] 94 / 5e-21 AT5G22790 518 / 0.0 reticulata-related 1 (.1) Potri.001G262200 [exp] 93 / 6e-21 AT5G12470 471 / 1e-166 Protein of unknown function (DUF3411) (.1) Potri.016G103100 [exp] 92 / 2e-20 AT2G37860 510 / 2e-180 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) Potri.001G256300 [exp] 86 / 2e-18 AT5G12470 443 / 3e-155 Protein of unknown function (DUF3411) (.1) Potri.008G074300 [exp] 77 / 3e-15 AT3G56140 968 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Potri.003G019600 [exp] 49 / 3e-06 AT5G24690 599 / 0.0 Protein of unknown function (DUF3411) (.1) Potri.001G210500 [exp] 48 / 9e-06 AT5G24690 602 / 0.0 Protein of unknown function (DUF3411) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003242 [exp] 379 / 3e-129 AT3G08640 372 / 6e-127 Protein of unknown function (DUF3411) (.1) Lus10035607 [exp] 335 / 1e-115 AT3G08640 330 / 2e-114 Protein of unknown function (DUF3411) (.1) Lus10019744 [exp] 93 / 5e-21 AT5G12470 452 / 1e-159 Protein of unknown function (DUF3411) (.1) Lus10016379 [exp] 93 / 8e-21 AT5G12470 451 / 1e-158 Protein of unknown function (DUF3411) (.1) Lus10040960 [exp] 90 / 2e-19 AT3G56140 879 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Lus10009845 [exp] 87 / 3e-18 AT3G56140 879 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Lus10009956 [exp] 82 / 6e-17 AT5G12470 459 / 8e-162 Protein of unknown function (DUF3411) (.1) Lus10024346 [exp] 78 / 3e-16 AT2G37860 415 / 7e-146 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) Lus10003180 [exp] 79 / 4e-16 AT5G12470 457 / 6e-161 Protein of unknown function (DUF3411) (.1) Lus10010224 [exp] 77 / 3e-15 AT3G56140 909 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11891 [poplar] [flax] RETICULATA-like Protein RETICULATA-related
Representative CDS sequence Show only first row Show all	>Potri.006G111300.2 pacid=42770095 polypeptide=Potri.006G111300.2.p locus=Potri.006G111300 ID=Potri.006G111300.2.v4.1 annot-version=v4.1 ATGGCAACGGCAGCAGCCCAGCTCCGATTCTCGACATTTGCAAGGCAATACGCTGCTAATTTCACCAAACAAAACAACCCTAGATTCCCAAATCCCAATT CTCCTTCTCTCTCTTTCCCTTTCTCCACCCCTCTTAATCCCTCCCTCCGCCTCCTCCATTCCAAACCACCCCACCTTTCCAATGCCGGTGGAGGCTTCGG TGGCAGTGGCGGAGATGGTGGAAACTGGAGTGGCGGCGGCGGCGGAGCTGGTGATTCGAGTTCTGACAATTCATCATCGTCCGCGGCGGGGTTTGGGGTT CTGGGTCTTTTTCTAAATGGGTGGAGATCGCGGGTCGCGGCGGATCCGCAGTTCCCTTTTAAGGTATTGATGGAGGAAGTAGTTGGGGTGTCTGCTTGTG TTCTTGGTGATATGGCATCGCGGCCGAATTTTGGTCTTGACGAGTTGGATTTTGTTTTTTCGACCCTGGTTGTTGGTTGTATACTGAATTTTACCTTGAT GTATTTGCTTGCGCCTACTGCGGCTGCTACTAGTCAGACATTGCCTGCAATTTTCGCCAATTGTCCGACAAGTCATATGTTTGAACCGGGTGCATATGGT TTGATGAACAGGCTTGGTACTTTTGTTTATAAAGGAACTATTTTTGCTGCTGTTGGTTTTGCCGCGGGTTTGGTAGGGACTGCGCTATCAAATGGGTTGA TTAAGATGAGGAAGAAGATGGATCCCACTTTTGAGACGCCGAATAAGGCACCTCCCACTGTTTTGAATGCATTGACCTGGGCAATTCATATGGGGTTTAG TAGTAATTTGAGGTACCAGACGCTGAATGGGGCTGAGTTTTTGTTGGAGAAAGGACTTTCTCCCTTGGCGTTTAAGACATCGGTCGTGGTTCTTAGGTGC TTGAATAATGTTCTTGGTGGGATGTCGTTTGTGATATTGGCGAGGATGACGGGTTCTCAGAGCGTTGAAGAACCAAAACTGGTTGATGTTGATGTCGGGC TGGCTGCTCCAGAGAAGGAGAAACTGCTTGATGGAGGAGACGAATTGCAGAGCAATCAGTCGACTTTCAAGTGA
AA sequence Show only first row Show all	>Potri.006G111300.2 pacid=42770095 polypeptide=Potri.006G111300.2.p locus=Potri.006G111300 ID=Potri.006G111300.2.v4.1 annot-version=v4.1 MATAAAQLRFSTFARQYAANFTKQNNPRFPNPNSPSLSFPFSTPLNPSLRLLHSKPPHLSNAGGGFGGSGGDGGNWSGGGGGAGDSSSDNSSSSAAGFGV LGLFLNGWRSRVAADPQFPFKVLMEEVVGVSACVLGDMASRPNFGLDELDFVFSTLVVGCILNFTLMYLLAPTAAATSQTLPAIFANCPTSHMFEPGAYG LMNRLGTFVYKGTIFAAVGFAAGLVGTALSNGLIKMRKKMDPTFETPNKAPPTVLNALTWAIHMGFSSNLRYQTLNGAEFLLEKGLSPLAFKTSVVVLRC LNNVLGGMSFVILARMTGSQSVEEPKLVDVDVGLAAPEKEKLLDGGDELQSNQSTFK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G08640			Protein of unknown function (D...		Potri.006G111300 [exp]	0	1
AT5G18170		GDH1	glutamate dehydrogenase 1 (.1)		Potri.019G034800 [exp]	1.73	0.7491	Pt-GDH1.1
AT3G10910			RING/U-box superfamily protein...		Potri.019G057700 [exp]	4.47	0.7767
AT5G14940			Major facilitator superfamily ...		Potri.004G068500 [exp]	5.09	0.7633
AT1G21890			nodulin MtN21 /EamA-like trans...		Potri.002G085100 [exp]	9.38	0.7474
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.015G027700 [exp]	12.24	0.7355
AT3G25597			unknown protein		Potri.008G111500 [exp]	18.49	0.7352
AT5G06570			alpha/beta-Hydrolases superfam...		Potri.016G065000 [exp]	18.89	0.7275
AT5G04200		AtMCP2f, ATMC9	metacaspase 2f, metacaspase 9 ...		Potri.016G024500 [exp]	19.67	0.7204
AT4G00230		XSP1	xylem serine peptidase 1 (.1)		Potri.002G151900 [exp]	21.90	0.7180
AT3G11050		ATFER2	ferritin 2 (.1)		Potri.008G072700 [exp]	22.84	0.6792	PFE2.2

Compare expression of checked genes

Potri.006G111300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.