Plant FIBer expression Database

Potri.006G111600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G01410 375 / 5e-129 NHL domain-containing protein (.1)
AT2G16760 87 / 4e-19 Calcium-dependent phosphotriesterase superfamily protein (.1)
AT2G47370 75 / 9e-15 Calcium-dependent phosphotriesterase superfamily protein (.1)
AT5G28660 42 / 0.0003 NHL domain-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G156300
[exp]
540 / 0 AT2G01410 431 / 3e-151 NHL domain-containing protein (.1)
Potri.014G120300
[exp]
106 / 5e-26 AT2G16760 393 / 1e-137 Calcium-dependent phosphotriesterase superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031240
[exp]
454 / 3e-160 AT2G01410 458 / 1e-161 NHL domain-containing protein (.1)
Lus10031811
[exp]
443 / 4e-156 AT2G01410 452 / 3e-159 NHL domain-containing protein (.1)
Lus10015347
[exp]
96 / 7e-22 AT2G16760 374 / 6e-130 Calcium-dependent phosphotriesterase superfamily protein (.1)
Lus10001126
[exp]
88 / 1e-18 AT4G18905 427 / 5e-142 Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info
Representative CDS sequence
>Potri.006G111600.4 pacid=42769743 polypeptide=Potri.006G111600.4.p locus=Potri.006G111600 ID=Potri.006G111600.4.v4.1 annot-version=v4.1
ATGTCGTCGTCTACCAAAATTCTCTTACTCTTTTTTATTGTGGGTCCCATCCTATCAACAGCCAAAACCCCACACGTCATCCATTTCCGATCTCCCAACC
TCTACCCCGAAAGCCTTACCTACGATCCCTCGGCACAGCACTTCATCGTCGGCTCCCTCCACCACCGCACTATCAACTCTGTCTCCGACGCCGGCGTCAC
CGAAACCATCATCTCCGACCCCTCCCTCCCTCCCAGCACCAGCATCCTCGGTCTCGCGGTGGATAAACTCAACAACCGCCTCCTCGCTGTCATCCACTCC
TTCGACTCTCTCCATCCCTTCAACGGCCTCGCCGCTTACGATCTCCGTTCCCGCCAGCGCCTCTTCCTCTCCCTCCTTCCTTCTACCCCCTCCGACGAAG
ACGGCCGCAGCCCCATGGCCAACGCTGTCGCTTTCGATTTCAAGGGCAACGCTTACGTCACAAACTCCGAGGGGAACTTTATTTGGAAGGTCAGCCCGGA
AGGAGAGGCCTCGATTTTCTCAACATCTCCGGTATTTACGCAGTTTCCCGTGGACCGCGACTCACCGTTGAGTTCCTTCGGGTTGAACGGGATTGCTTAC
GTCAGCAAGGGGTATTTGCTGGTGGTGCAGACCAATACGGGCAAGTTGTTCAAGGTTGATGCCGATGACGGCACGGCAAGGAATGTTTTGTTGAGCGAGG
ATTTGCCGGAGGGCGATGGGATTGCGATAAGGGGAGACGGTGTCGTTTTGGTTGTGTCGAATAAGAAGCTGTGGTTCTTGAAGAGTGATGATAGTTGGGG
AGAGGGAGTGGTTTATGACAAAATTGACCTTGATGGGGAGAGGTTTCCTACCTCGGTTGTGGTGGGGAGAGAGGATAGGGCGTATGTGTTATATGGGTGT
GTGGTGGAGGGTCTAAGTGGGAAGGGAGGGAGGGAGTTGTTTGATATAGAGGAGGTGAGGTCGGAGAAGGAGAGTGAAGATGAGAAAATTTGGGTGTATG
TGTTGATAGGATTAGGCTTGGCAATTTTTTTTATTTGGAGGTTTCAAATGAAGCAGCTTATCAGAAACATGGACAAGAAGGCCAACTGA
AA sequence
>Potri.006G111600.4 pacid=42769743 polypeptide=Potri.006G111600.4.p locus=Potri.006G111600 ID=Potri.006G111600.4.v4.1 annot-version=v4.1
MSSSTKILLLFFIVGPILSTAKTPHVIHFRSPNLYPESLTYDPSAQHFIVGSLHHRTINSVSDAGVTETIISDPSLPPSTSILGLAVDKLNNRLLAVIHS
FDSLHPFNGLAAYDLRSRQRLFLSLLPSTPSDEDGRSPMANAVAFDFKGNAYVTNSEGNFIWKVSPEGEASIFSTSPVFTQFPVDRDSPLSSFGLNGIAY
VSKGYLLVVQTNTGKLFKVDADDGTARNVLLSEDLPEGDGIAIRGDGVVLVVSNKKLWFLKSDDSWGEGVVYDKIDLDGERFPTSVVVGREDRAYVLYGC
VVEGLSGKGGRELFDIEEVRSEKESEDEKIWVYVLIGLGLAIFFIWRFQMKQLIRNMDKKAN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G01410 NHL domain-containing protein ... Potri.006G111600
[exp]
0 1
AT2G36220 unknown protein Potri.016G079500
[exp]
4.47 0.8953
AT3G17860 ZIM TIFY6B, JAI3, J... JASMONATE-INSENSITIVE 3, jasmo... Potri.012G044900
[exp]
6.70 0.9180
AT3G21360 2-oxoglutarate (2OG) and Fe(II... Potri.001G190100
[exp]
8.30 0.8979
AT3G07790 DGCR14-related (.1) Potri.014G164200
[exp]
8.77 0.8936
AT1G07250 UGT71C4 UDP-glucosyl transferase 71C4 ... Potri.016G014300
[exp]
11.22 0.8944
AT4G17940 Tetratricopeptide repeat (TPR)... Potri.002G256900
[exp]
11.31 0.9038
AT4G39700 Heavy metal transport/detoxifi... Potri.010G005300
[exp]
13.00 0.8894
AT3G49780 ATPSK3(FORMERSY... phytosulfokine 4 precursor (.1... Potri.007G006800
[exp]
13.03 0.8931 Pt-PSK3.1
Potri.002G057450
[exp]
13.85 0.8370
AT5G50210 SUFE3, OLD5, QS SULFUR E 3, ONSET OF LEAF DEAT... Potri.015G085300
[exp]
16.00 0.8960

Potri.006G111600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.