Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01960 572 / 0 RING/U-box superfamily protein (.1) AT1G65040 64 / 4e-11 AtHrd1B homolog of yeast Hrd1, RING/U-box superfamily protein (.1.2.3) AT3G16090 63 / 3e-10 AtHrd1A homolog of yeast Hrd1, RING/U-box superfamily protein (.1) AT2G42350 54 / 7e-08 RING/U-box superfamily protein (.1) AT1G74990 50 / 2e-07 RING/U-box superfamily protein (.1) AT2G28920 49 / 6e-07 RING/U-box superfamily protein (.1) AT1G18780 51 / 9e-07 RING/U-box superfamily protein (.1) AT1G18770 47 / 1e-06 RING/U-box superfamily protein (.1) AT3G62690 50 / 2e-06 ATL5 AtL5 (.1) AT3G16720 50 / 2e-06 ATL2 TOXICOS EN LEVADURA 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G141200 [exp] 680 / 0 AT5G01960 546 / 0.0 RING/U-box superfamily protein (.1) Potri.013G160000 [exp] 476 / 8e-166 AT5G01960 545 / 0.0 RING/U-box superfamily protein (.1) Potri.019G132201 [exp] 371 / 3e-125 AT5G01960 377 / 2e-128 RING/U-box superfamily protein (.1) Potri.013G088400 [exp] 66 / 3e-11 AT3G16090 613 / 0.0 homolog of yeast Hrd1, RING/U-box superfamily protein (.1) Potri.019G051500 [exp] 64 / 1e-10 AT3G16090 661 / 0.0 homolog of yeast Hrd1, RING/U-box superfamily protein (.1) Potri.006G239500 [exp] 58 / 9e-09 AT2G20030 248 / 1e-78 RING/U-box superfamily protein (.1) Potri.018G085001 [exp] 54 / 2e-07 AT4G28890 290 / 2e-94 RING/U-box superfamily protein (.1) Potri.018G042501 [exp] 53 / 2e-07 AT2G20030 244 / 2e-77 RING/U-box superfamily protein (.1) Potri.005G036800 [exp] 53 / 3e-07 AT3G05200 261 / 7e-84 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000996 [exp] 586 / 0 AT5G01960 626 / 0.0 RING/U-box superfamily protein (.1) Lus10011027 [exp] 561 / 0 AT5G01960 619 / 0.0 RING/U-box superfamily protein (.1) Lus10023477 [exp] 59 / 4e-09 AT3G16090 650 / 0.0 homolog of yeast Hrd1, RING/U-box superfamily protein (.1) Lus10040359 [exp] 59 / 4e-09 AT3G16090 652 / 0.0 homolog of yeast Hrd1, RING/U-box superfamily protein (.1) Lus10023617 [exp] 54 / 1e-07 AT5G05810 219 / 1e-68 RING/U-box superfamily protein (.1) Lus10034953 [exp] 52 / 6e-07 AT2G20030 278 / 2e-90 RING/U-box superfamily protein (.1) Lus10012975 [exp] 52 / 7e-07 AT2G20030 291 / 2e-95 RING/U-box superfamily protein (.1) Lus10020007 [exp] 50 / 2e-06 AT2G26350 449 / 2e-158 peroxin 10 (.1) Lus10012376 [exp] 47 / 3e-06 AT3G46620 60 / 3e-11 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10037490 [exp] 49 / 5e-06 AT3G16720 224 / 2e-70 TOXICOS EN LEVADURA 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.006G111800.4 pacid=42769560 polypeptide=Potri.006G111800.4.p locus=Potri.006G111800 ID=Potri.006G111800.4.v4.1 annot-version=v4.1 ATGGTTAGGGCTAGGGCATCATCTACTGCTGATACGATAATGGAAGGGTCAGGGAATATTTCTGATCCGTACAGAGGCAGAGGCGGAGGAAATAGTAATA GCAGTAACAATTCTTCACCTTCTTCGTCGAGGAGATATGGAATGTTATCAGCTTCTAGTATTCTTCAAGCGCCTATTTCTCTTTTATTAGAGTATTCTGG TCTGTTAAGAACTACTCGTTCATCTCACCAAGAAACAGAGTCTTTGATTCCTGGTGGAGGAGGACTTGGTTCTACTAGACTTGATGGTTCGTCGGCTGCG GTGGTCTCTAATAATGGGGAGGTTGCGATTAGGATAATTGGGTCGGGGGAACATGAACATGACAGGGATAGTTCTGGTGGATTGGTTGTGGGGCAAGTTG GTGGAGGGCAGAATGAGGTGTTGGGACAGCAGCAAACGATGGGTGCAGATGTTCTTCAGGGTGATTTGAGAAGTGATCATGAAGGAGGAGGGGGAGATGC CACTGGTGGTGCCGGTAGTCATCAGAGTTCGAGTGTGGGTGGGGATGGGGAAGCTGCTGATGGGGCTGGGGGTAATGGGAGGGATTCAACATACCAGAGA TATGATATCCAGCAAGCTGCCAGGTGGATTGAGCAAGTGCTTCCTTTTTCTTTGCTTCTATTGGTTGTCTTCATTCGCCAGCATTTGCAAGGTTTCTTTG TTACAATTTGGATTGCTGTTGTCATGTTCAAGTCTAATGATATTCTACGAAAACAAACAGCTCTGAAGGGTGAGAGGAAAGTCTCTATGCTTGTTGGCAT CTCTCTTGCATTCGCGATTCATGTGGTCGGTGTTTACTGGTGGTATCAAAATGATGATCTTCTGTACCCATTAATTATGCTTCCCCCCAAATCTATACCT CCTTTCTGGCATGCTATTTTCATCATCATGGTGAATGATACTTTGGTCCGGCAGGCAGCAATGGTATTCAAATGTATTCTGTTAATTTCTTACAAGAACA GTAGAGGCCGAAATTATCGTAAACAGGGTCAAATGCTTACTTTGGTTGAGTACCTGATGCTGCTGTACCGTGCCTTATTGCCTACACCAGTCTGGTATCG TTTCTTTTTGAACAAAGAATATGGCAGCCTCTTTTCGTCACTCATGACTGGGTTGTATCTAACTTTCAAGCTCACATCTGTTGTTGAGAAGGTACAATCT TTCTGTGCTGCTTTGAAGGCATTATCACGTAAAGAGGTGCACTATGGGGCATATGCAACATCAGAGCAGGTCAATGCAGCAGGAGATCTGTGTGCCATAT GCCAGGAAAAGATGCACGCACCTATACTACTTCGATGTAAACACATATTTTGCGAGGATTGTGTATCAGAATGGTTTGAGAGGGAAGGGACGTGCCCCTT GTGCAGGGCTTTGGTCAAACCTGCAGATCTCAGATCGTTCAGTGATGGCTCAACTAGTTTATTATTCCAGATATTCTAG
AA sequence Show only first row Show all	>Potri.006G111800.4 pacid=42769560 polypeptide=Potri.006G111800.4.p locus=Potri.006G111800 ID=Potri.006G111800.4.v4.1 annot-version=v4.1 MVRARASSTADTIMEGSGNISDPYRGRGGGNSNSSNNSSPSSSRRYGMLSASSILQAPISLLLEYSGLLRTTRSSHQETESLIPGGGGLGSTRLDGSSAA VVSNNGEVAIRIIGSGEHEHDRDSSGGLVVGQVGGGQNEVLGQQQTMGADVLQGDLRSDHEGGGGDATGGAGSHQSSSVGGDGEAADGAGGNGRDSTYQR YDIQQAARWIEQVLPFSLLLLVVFIRQHLQGFFVTIWIAVVMFKSNDILRKQTALKGERKVSMLVGISLAFAIHVVGVYWWYQNDDLLYPLIMLPPKSIP PFWHAIFIIMVNDTLVRQAAMVFKCILLISYKNSRGRNYRKQGQMLTLVEYLMLLYRALLPTPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKVQS FCAALKALSRKEVHYGAYATSEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFEREGTCPLCRALVKPADLRSFSDGSTSLLFQIF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01960			RING/U-box superfamily protein...		Potri.006G111800 [exp]	0	1
AT5G66730	C2H2ZnF	IDD1, ENY	INDETERMINATE DOMAIN 1, ENHYDR...		Potri.005G125600 [exp]	5.47	0.8790
AT4G31170			Protein kinase superfamily pro...		Potri.006G280000 [exp]	5.47	0.8948
					Potri.012G114166 [exp]	7.74	0.9071
AT4G13460		SET22, SDG22, S...	SETDOMAIN GROUP 22, SU(VAR)3-9...		Potri.008G173100 [exp]	9.38	0.8842
AT5G63320		NPX1	nuclear protein X1 (.1.2.3)		Potri.012G094300 [exp]	9.89	0.8913
AT1G69060			Chaperone DnaJ-domain superfam...		Potri.010G139100 [exp]	10.39	0.8759
					Potri.019G129780 [exp]	12.24	0.8963
AT3G22270			Topoisomerase II-associated pr...		Potri.006G021900 [exp]	13.85	0.8726
AT1G79090			unknown protein		Potri.001G457800 [exp]	16.12	0.8421
AT1G32610			hydroxyproline-rich glycoprote...		Potri.003G091800 [exp]	18.00	0.8621

Compare expression of checked genes

Potri.006G111800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.