Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	BRD919
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20670 142 / 3e-35 DNA-binding bromodomain-containing protein (.1) AT5G55040 140 / 2e-34 DNA-binding bromodomain-containing protein (.1.2) AT1G76380 136 / 2e-33 DNA-binding bromodomain-containing protein (.1.2.3) AT5G46550 68 / 1e-11 DNA-binding bromodomain-containing protein (.1) AT1G32750 64 / 3e-10 GTD1, TAF1, HAF1, HAC13, HAF01 TBP-ASSOCIATED FACTOR 1, HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 1, HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 13, HAC13 protein (HAC13) (.1) AT3G19040 60 / 6e-09 TAF1b, HAF2, TAF1 TBP-ASSOCIATED FACTOR 1B, TBP-ASSOCIATED FACTOR 1, histone acetyltransferase of the TAFII250 family 2 (.1) AT1G17790 57 / 3e-08 DNA-binding bromodomain-containing protein (.1) AT1G06230 56 / 7e-08 GTE4 global transcription factor group E4 (.1.2.3) AT3G01770 56 / 1e-07 ATBET10 bromodomain and extraterminal domain protein 10 (.1) AT1G73150 54 / 2e-07 GTE3 global transcription factor group E3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G141400 [exp] 1115 / 0 AT1G20670 142 / 4e-35 DNA-binding bromodomain-containing protein (.1) Potri.019G132601 [exp] 246 / 2e-71 AT1G20670 137 / 1e-33 DNA-binding bromodomain-containing protein (.1) Potri.004G206200 [exp] 160 / 1e-40 AT1G20670 316 / 2e-97 DNA-binding bromodomain-containing protein (.1) Potri.009G167500 [exp] 152 / 2e-38 AT1G20670 316 / 1e-97 DNA-binding bromodomain-containing protein (.1) Potri.002G009100 [exp] 140 / 2e-34 AT1G20670 449 / 2e-149 DNA-binding bromodomain-containing protein (.1) Potri.005G252200 [exp] 130 / 4e-31 AT1G20670 432 / 2e-142 DNA-binding bromodomain-containing protein (.1) Potri.019G090700 [exp] 64 / 3e-10 AT1G06230 443 / 2e-145 global transcription factor group E4 (.1.2.3) Potri.001G376400 [exp] 61 / 1e-09 AT1G06230 267 / 4e-82 global transcription factor group E4 (.1.2.3) Potri.013G118900 [exp] 61 / 3e-09 AT1G06230 463 / 5e-153 global transcription factor group E4 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022999 [exp] 146 / 7e-37 AT1G20670 316 / 2e-100 DNA-binding bromodomain-containing protein (.1) Lus10001391 [exp] 144 / 2e-36 AT1G20670 306 / 1e-96 DNA-binding bromodomain-containing protein (.1) Lus10043121 [exp] 132 / 2e-31 AT5G55040 533 / 9e-176 DNA-binding bromodomain-containing protein (.1.2) Lus10032629 [exp] 130 / 6e-31 AT5G55040 525 / 1e-172 DNA-binding bromodomain-containing protein (.1.2) Lus10030739 [exp] 128 / 1e-30 AT1G20670 418 / 4e-138 DNA-binding bromodomain-containing protein (.1) Lus10013220 [exp] 126 / 7e-30 AT1G20670 431 / 5e-143 DNA-binding bromodomain-containing protein (.1) Lus10027579 [exp] 64 / 4e-10 AT1G32750 1622 / 0.0 TBP-ASSOCIATED FACTOR 1, HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 1, HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 13, HAC13 protein (HAC13) (.1) Lus10008553 [exp] 64 / 5e-10 AT1G32750 1623 / 0.0 TBP-ASSOCIATED FACTOR 1, HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 1, HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 13, HAC13 protein (HAC13) (.1) Lus10033623 [exp] 61 / 4e-09 AT1G06230 493 / 9e-164 global transcription factor group E4 (.1.2.3) Lus10017661 [exp] 61 / 4e-09 AT1G06230 499 / 3e-165 global transcription factor group E4 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00439 [poplar] [flax] Bromodomain Bromodomain
Representative CDS sequence Show only first row Show all	>Potri.006G112000.1 pacid=42767449 polypeptide=Potri.006G112000.1.p locus=Potri.006G112000 ID=Potri.006G112000.1.v4.1 annot-version=v4.1 ATGAAGAGTAGGAGAATGTTTAGAGAGGGACACAGGAGGAGTCCTAGGATATCTGCTTTGGATGTGTGGAAGGCTCAGCCACTGAGTAGGACCACTGTTG CTAAAAAAACTAGGCTTAGTAGGAGCATTACAAGCACTAGTACCAGTACTGTTGCTAAGGTACAAGACAAGGAGTTGGAGCAGCAAAAGGAGAACCAACC TGAGGGTCCAGCCTGTAGGACAAGGGCAAAGAAAAAGAGGAAGCTTAAACCACTTCAAGATGTGGCTTCTACTCCCAATGCTCAACAGGAGCCCAAGTCA AGTGATGAATCAGATGAAAGAGAACTAAGTCAAAAAGATCATCCAATCAATAGTGATGAAGCCATTTTGCAGAAAAAAGATGGCCCAAAACAGAAAGGAC AAGCTCATTCTCCAGATCAACCATCTAGTTTTTCATGTACATCATGGGTGCCAGAAAAACGAATACTTGAGCATATCGTTGACATATTACAGAGGAGAGA TACCCATGAAATATTTGCAGAACCAGTTGACCCAAATGAGGTTGAGGAGTATTATGAAATCATCCAAGAGCCTATGGATTTCGGCACCATGAGGGCTAAA CTTCATGAAGGAATGTATAAAAGTCTTGAACAATTTGAGCATGATGTGTTTCTAATATCCGGAAATGCAATGCACTTCAATTCCTCTTCCACCATTTATT TCAGACAGGCTCGTGCCATAGCTGAATTAGCTAAGAAGGTTTTCCATGTTCTGAAAACTGATCCTGATAATTTTGAACTGGAATTCTCGGGGACAAGACG ACGAAGTGGTAGAAGGCCCCAACATGAAGTCAAGGGTTCAACTTATAGCCCATCCCTTAAGGTTGCGAGGAGTTCAAAATCCAGCAATACCAATACTGCA GTTCATGTATCCCCGAAACCCACCCCATGTTTAACAAGTTGTTCATCAAGTCTAAAAAGAGCGATCCGAGTGAACTCTGCATGCTTGGGCATCACTACGC ATTCTGATGCAAGAGATGATGAAGTACTTTTTGGTTCTGGAGATGGTAAAAGATTTGGTTTTTCTGAAACAGATAGGCGCTCTACATATAAGCCATGGAT GTCGTTCCTTGATGAGAGCTATCCAATTATTTCATCAATTTATAGTAATTCAAAGCCACTAGTGCACGTGAATCAGCAGGAAATTGCCTATCATAAAAGC TTATTCTTGTTTGTTAAAGACGTAGGACCAACTGCCCAAATGGTTGCCAAACGCAAGTTAGATGGATGGCCGACTACCGCTGCCAATTTTCCAACTCCAG GTTCAAACTTTTGGCTTCAGTCTCCAAACTGTCAAACTTCTGCGGCATCAACCTCTGCTCAGTGTCCACCTACTCTTGATGCTACAATCACAGCTGCATG CCAAAATGTAAGCCGGGGTGACAGAATAGACATGTTTGATGTCGATAAAGGAGGTGTTGCTTATGCTGGTAACGACTTTGGCATTCATGGAACTTCAGAG AAAGTGGCACCAAATGGTAATTGTTACAGTAACTTTGGTTCCATTAGCAGTGATGCTTCCTTTTGTAATGACACGGATGTTGCCAGTGTCTCAAGGAATG AAAAGCCTCGCCAAAATCAAAATAGAGGCCTTCAACAGGGTTCATATTCTCCTGTCGCTGATGCCAGAGATCTGAATCTTTTAGCTGCTGGTTCAAGTAA AAAGGATAATGGATCGGCAATGCATAAACTGGAGAGAAGCAAGATGGATAACAAATCACAACCATCGGATTCAGGTTTCAAGGGTGTTAGGTCAAATGCT TTGGAAAGCAGGTTGAGTGATACTTACAGTTTATCACCATCTTCATGGCCCCTAAAGACCACTGGCATGTCAAGTTTTAATCGACATATTGGCAATACAC ATAGTCCAAGTACACAATGTCTGAGAGGTGACGATCAAGCCCCAGCTGCTCAAGTTCCAAATCATGGACTTGGCAGTTCGTCCGAGACAATTCAGGACTT GAAACCTAGCGAACAATTGACACCTGTTTCTGGCCATTTCATCTTTGATCTGCCATTTTTTAAGACACAGCTTGACCAGATAAATTCTCCGGAGCAGAAT AGATTTTTGCAGCATGGTTCAGGTATGCAGGGATCTTTTCCGAACAGAATAGGTGAGACTTACAATGATAGCCGTCCACACTCCTCGTTGAATACTCAGC ATACTAACTTGGCTCTGCAGCTGTAA
AA sequence Show only first row Show all	>Potri.006G112000.1 pacid=42767449 polypeptide=Potri.006G112000.1.p locus=Potri.006G112000 ID=Potri.006G112000.1.v4.1 annot-version=v4.1 MKSRRMFREGHRRSPRISALDVWKAQPLSRTTVAKKTRLSRSITSTSTSTVAKVQDKELEQQKENQPEGPACRTRAKKKRKLKPLQDVASTPNAQQEPKS SDESDERELSQKDHPINSDEAILQKKDGPKQKGQAHSPDQPSSFSCTSWVPEKRILEHIVDILQRRDTHEIFAEPVDPNEVEEYYEIIQEPMDFGTMRAK LHEGMYKSLEQFEHDVFLISGNAMHFNSSSTIYFRQARAIAELAKKVFHVLKTDPDNFELEFSGTRRRSGRRPQHEVKGSTYSPSLKVARSSKSSNTNTA VHVSPKPTPCLTSCSSSLKRAIRVNSACLGITTHSDARDDEVLFGSGDGKRFGFSETDRRSTYKPWMSFLDESYPIISSIYSNSKPLVHVNQQEIAYHKS LFLFVKDVGPTAQMVAKRKLDGWPTTAANFPTPGSNFWLQSPNCQTSAASTSAQCPPTLDATITAACQNVSRGDRIDMFDVDKGGVAYAGNDFGIHGTSE KVAPNGNCYSNFGSISSDASFCNDTDVASVSRNEKPRQNQNRGLQQGSYSPVADARDLNLLAAGSSKKDNGSAMHKLERSKMDNKSQPSDSGFKGVRSNA LESRLSDTYSLSPSSWPLKTTGMSSFNRHIGNTHSPSTQCLRGDDQAPAAQVPNHGLGSSSETIQDLKPSEQLTPVSGHFIFDLPFFKTQLDQINSPEQN RFLQHGSGMQGSFPNRIGETYNDSRPHSSLNTQHTNLALQL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20670			DNA-binding bromodomain-contai...		Potri.006G112000 [exp]	0	1	BRD919
AT4G24580		REN1	ROP1 ENHANCER 1, Rho GTPase ac...		Potri.005G157400 [exp]	2.82	0.8105
AT3G45850			P-loop containing nucleoside t...		Potri.016G082400 [exp]	6.32	0.8020
AT2G41830			Uncharacterized protein (.1)		Potri.006G052100 [exp]	8.18	0.8229
AT2G45340			Leucine-rich repeat protein ki...		Potri.014G068700 [exp]	20.49	0.7992
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Potri.001G120000 [exp]	20.71	0.7414	NAC038
AT5G18410		ATSRA1, KLK, PI...	PIROGI 121, PIROGI, KLUNKER, t...		Potri.013G051200 [exp]	24.55	0.7839
AT5G18410		ATSRA1, KLK, PI...	PIROGI 121, PIROGI, KLUNKER, t...		Potri.019G025200 [exp]	26.72	0.7978
AT1G38131			O-fucosyltransferase family pr...		Potri.002G087300 [exp]	26.83	0.7893
AT2G29050		ATRBL1	RHOMBOID-like 1 (.1.2)		Potri.001G241300 [exp]	27.92	0.8091
AT5G42340		PUB15	Plant U-Box 15 (.1)		Potri.001G012300 [exp]	28.77	0.7182

Compare expression of checked genes

Potri.006G112000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.