Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01980 293 / 7e-93 RING/U-box superfamily protein (.1) AT5G08139 125 / 3e-31 RING/U-box superfamily protein (.1) AT3G19950 109 / 3e-26 RING/U-box superfamily protein (.1) AT3G02340 104 / 7e-24 RING/U-box superfamily protein (.1) AT5G15820 103 / 7e-24 RING/U-box superfamily protein (.1) AT5G20910 96 / 2e-21 AIP2 ABI3-interacting protein 2, RING/U-box superfamily protein (.1) AT3G46620 97 / 3e-21 zinc finger (C3HC4-type RING finger) family protein (.1) AT2G40830 94 / 1e-20 RHC1A RING-H2 finger C1A (.1.2.3) AT5G59550 94 / 2e-20 zinc finger (C3HC4-type RING finger) family protein (.1) AT5G60820 94 / 2e-20 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G141600 [exp] 513 / 0 AT5G01980 226 / 1e-69 RING/U-box superfamily protein (.1) Potri.015G028400 [exp] 122 / 2e-30 AT3G19950 256 / 2e-83 RING/U-box superfamily protein (.1) Potri.012G036700 [exp] 117 / 1e-28 AT3G19950 273 / 5e-90 RING/U-box superfamily protein (.1) Potri.007G074014 [exp] 108 / 6e-26 AT3G19950 278 / 5e-93 RING/U-box superfamily protein (.1) Potri.005G090500 [exp] 107 / 7e-26 AT3G19950 279 / 4e-93 RING/U-box superfamily protein (.1) Potri.015G047900 [exp] 110 / 2e-25 AT5G08139 201 / 3e-60 RING/U-box superfamily protein (.1) Potri.012G065300 [exp] 108 / 8e-25 AT5G08139 178 / 4e-51 RING/U-box superfamily protein (.1) Potri.001G243300 [exp] 99 / 2e-22 AT3G46620 239 / 8e-76 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.016G029300 [exp] 93 / 1e-20 AT2G40830 317 / 9e-108 RING-H2 finger C1A (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031422 [exp] 121 / 2e-30 AT5G64920 210 / 5e-66 COP1-interacting protein 8 (.1) Lus10010179 [exp] 112 / 9e-28 AT3G19950 285 / 6e-96 RING/U-box superfamily protein (.1) Lus10008874 [exp] 104 / 1e-23 AT5G08139 198 / 3e-59 RING/U-box superfamily protein (.1) Lus10023235 [exp] 103 / 2e-23 AT5G08139 194 / 7e-58 RING/U-box superfamily protein (.1) Lus10004712 [exp] 94 / 2e-20 AT5G59550 294 / 6e-97 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10040783 [exp] 92 / 2e-20 AT5G59550 228 / 1e-72 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10040278 [exp] 90 / 6e-20 AT5G59550 224 / 2e-71 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10002637 [exp] 92 / 1e-19 AT1G55530 257 / 4e-82 RING/U-box superfamily protein (.1) Lus10001582 [exp] 87 / 1e-19 AT2G40830 178 / 2e-55 RING-H2 finger C1A (.1.2.3) Lus10020258 [exp] 93 / 2e-19 AT1G19800 469 / 4e-161 ATP-binding cassette I14, trigalactosyldiacylglycerol 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.006G112100.4 pacid=42768405 polypeptide=Potri.006G112100.4.p locus=Potri.006G112100 ID=Potri.006G112100.4.v4.1 annot-version=v4.1 ATGGATAGGGTTTTGCAAAGAACTTCACAGGACGTGCCCCTGTCCACTGCTCATATCCATGTTAATGGTGGTTTTGTAGCTGACCATCCTAGCCACTCAG CATTATGTGCTCTGTGCCGAAGTATTCTTGTACCTGATAATGATGATCTTGAGATTAGTATATGTGGGCACTGTAAATTTTTGCTGCTTGAAGATCTTGA GACCCCTACTCGAGATTCTCATTTGAGGAGGCTTCACAGAGGAAGAAGAACCAGGTACAGCAGCTCTGAATCGATTGACACCCTTTTCTCACAACAATTT TCTCAGGTGATTAATTTGGCTAGGCAAAACCACAACACCATTTATGGGAATGAGGATCGATCTATAGATGGTGATAGTTCTGCTAGGTTGTTACAGCGTA CGAGCTCTCGTACAACTCCAAGTAGTTCTCGAAGATGGCAGCATCTTTTTTCAGATTCTGAAAGTGAGAGTTTTGATAATGTGGATTCTCTTTATGGGGA GAGTGAAATTAATTTCAGATCCAGTAGGTACCGGGTTTTTCACAGTGAGAGTGATGCCATTTCTTCAAGTGTGTATGGTGAAGACTCTGATGCTTCTGTG GATGGACATAGTGTCCTGGACACAGAAATGTTTATTCAAGCAGATGAGGGAAGCAATTTTGACAGCGATACTGACATAGATCCAATGCATGCTGGTCTCC ACCAATGGAACTCTGATGACCTAGAAGAGGAAGAGGATGAAGAAGATGAGGAATGGGAAGAGGCTGATATTGAGGAAGACACAATTGGATCGGTAGAAGC TGGAGCTCGACTTCGAAATATGTTTATTTCAAGTCCTAGCGAAGGTAATGGCCCTGTTAGTTGGCGCAGGCAGTTTCGTTCACCGGAATTTGAGGGCATG AATCGCCGGAGAACCAGGCAAAGTAGACAAGCATATAACCATGGCTTCTTAGCTAACTTGGAAGAATCAGAATTACCACGACACATGTGGAATTCTGAGT TCGGAGATTATGCCACAGGCTTTGGGGATTTGCTTGAAGCTCTTGCTCGTTCTGATATTGGAAGGAGAGGAGCACCTCCTGCAGCTGTGTCTTTTGTGAA TAATCTACCACTTGTGATCATCAATGAGGAACATGAGAAGCATGATGGTTTAGCTTGTGCAATCTGCAAGGATCTTTTGCCAATTGGCACTGAAGTTAAC AAGCTTCCCTGCCTTCACCTATACCACCCTTACTGTATATTGCCTTGGCTGAGTGCACGAAATTCATGTCCTCTCTGCAGGTATGAATTTCCAACCGATG ATAAAGACTATGAGGAGGGTCGGCAAAACTCTAGTACCAGAATGGAGATGCATGGTATTCAGCGGCAGGAAGTTAGCGAGGACAGTTCATCGGATGTCTC AGATGAACCTCTTGAACATGGTCAAAGAGGGAGGGGATTCCTAGATGTGGGCCCGCCCTTAAATAGCTCTGGCAGAGAGGGCAGTGGAAGGAGATGGCTT TTGCTTGCTGCTGCCCCCCTTGTTAGCCTTTTGGGTATTGTCTTTGTGATGTGGTGGGGCAATCCTCAAGGAAGACGGGCAAATGGTCATTGCAATTTCT CTGGGAGAGGCCTGCATCAAATTCAAGTTTCTGGCTCTTCCCAACTCAACCAAAGGGGCAATGGGAGGAGAAGATGGTGGTCTTTTTTCTGA
AA sequence Show only first row Show all	>Potri.006G112100.4 pacid=42768405 polypeptide=Potri.006G112100.4.p locus=Potri.006G112100 ID=Potri.006G112100.4.v4.1 annot-version=v4.1 MDRVLQRTSQDVPLSTAHIHVNGGFVADHPSHSALCALCRSILVPDNDDLEISICGHCKFLLLEDLETPTRDSHLRRLHRGRRTRYSSSESIDTLFSQQF SQVINLARQNHNTIYGNEDRSIDGDSSARLLQRTSSRTTPSSSRRWQHLFSDSESESFDNVDSLYGESEINFRSSRYRVFHSESDAISSSVYGEDSDASV DGHSVLDTEMFIQADEGSNFDSDTDIDPMHAGLHQWNSDDLEEEEDEEDEEWEEADIEEDTIGSVEAGARLRNMFISSPSEGNGPVSWRRQFRSPEFEGM NRRRTRQSRQAYNHGFLANLEESELPRHMWNSEFGDYATGFGDLLEALARSDIGRRGAPPAAVSFVNNLPLVIINEEHEKHDGLACAICKDLLPIGTEVN KLPCLHLYHPYCILPWLSARNSCPLCRYEFPTDDKDYEEGRQNSSTRMEMHGIQRQEVSEDSSSDVSDEPLEHGQRGRGFLDVGPPLNSSGREGSGRRWL LLAAAPLVSLLGIVFVMWWGNPQGRRANGHCNFSGRGLHQIQVSGSSQLNQRGNGRRRWWSFF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01980			RING/U-box superfamily protein...		Potri.006G112100 [exp]	0	1
AT5G49230		HRB1	HYPERSENSITIVE TO RED AND BLUE...		Potri.010G000800 [exp]	2.82	0.8124
AT5G41590			Protein of unknown function (D...		Potri.003G133200 [exp]	4.47	0.8080
AT5G17680			disease resistance protein (TI...		Potri.019G069200 [exp]	12.60	0.8204
					Potri.005G240500 [exp]	21.90	0.7655
					Potri.006G233301 [exp]	21.93	0.7797
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Potri.017G047800 [exp]	25.69	0.7694
AT1G71360			Galactose-binding protein (.1)		Potri.019G068900 [exp]	28.37	0.7556
AT5G13890			Family of unknown function (DU...		Potri.010G067000 [exp]	32.68	0.8079
AT1G20670			DNA-binding bromodomain-contai...		Potri.005G252200 [exp]	37.84	0.6904
AT5G37710			alpha/beta-Hydrolases superfam...		Potri.004G086900 [exp]	40.07	0.7001

Compare expression of checked genes

Potri.006G112100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.