Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01990 602 / 0 Auxin efflux carrier family protein (.1) AT1G71090 290 / 7e-94 Auxin efflux carrier family protein (.1) AT2G17500 208 / 4e-63 Auxin efflux carrier family protein (.1.2.3.4) AT5G65980 208 / 5e-63 Auxin efflux carrier family protein (.1) AT1G76520 190 / 2e-56 Auxin efflux carrier family protein (.1.2) AT1G20925 191 / 5e-56 Auxin efflux carrier family protein (.1) AT1G76530 142 / 5e-38 Auxin efflux carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G141700 [exp] 671 / 0 AT5G01990 622 / 0.0 Auxin efflux carrier family protein (.1) Potri.008G127700 [exp] 290 / 4e-94 AT1G71090 660 / 0.0 Auxin efflux carrier family protein (.1) Potri.004G093200 [exp] 286 / 8e-93 AT1G71090 513 / 1e-180 Auxin efflux carrier family protein (.1) Potri.010G115200 [exp] 285 / 5e-92 AT1G71090 607 / 0.0 Auxin efflux carrier family protein (.1) Potri.017G122400 [exp] 285 / 5e-92 AT1G71090 580 / 0.0 Auxin efflux carrier family protein (.1) Potri.005G099300 [exp] 212 / 2e-64 AT2G17500 475 / 2e-167 Auxin efflux carrier family protein (.1.2.3.4) Potri.002G003500 [exp] 180 / 2e-52 AT1G20925 499 / 4e-176 Auxin efflux carrier family protein (.1) Potri.003G108100 [exp] 177 / 3e-51 AT1G76520 398 / 4e-137 Auxin efflux carrier family protein (.1.2) Potri.001G456400 [exp] 176 / 9e-51 AT1G76520 419 / 1e-145 Auxin efflux carrier family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003240 [exp] 598 / 0 AT5G01990 610 / 0.0 Auxin efflux carrier family protein (.1) Lus10035610 [exp] 594 / 0 AT5G01990 605 / 0.0 Auxin efflux carrier family protein (.1) Lus10012708 [exp] 203 / 4e-61 AT5G65980 494 / 2e-175 Auxin efflux carrier family protein (.1) Lus10035978 [exp] 200 / 6e-60 AT5G65980 486 / 2e-172 Auxin efflux carrier family protein (.1) Lus10001303 [exp] 197 / 5e-59 AT5G65980 491 / 6e-174 Auxin efflux carrier family protein (.1) Lus10036000 [exp] 194 / 2e-58 AT1G71090 486 / 3e-172 Auxin efflux carrier family protein (.1) Lus10016704 [exp] 193 / 4e-58 AT1G71090 481 / 2e-170 Auxin efflux carrier family protein (.1) Lus10025166 [exp] 176 / 1e-50 AT1G76520 455 / 8e-160 Auxin efflux carrier family protein (.1.2) Lus10016688 [exp] 174 / 3e-47 AT2G17525 655 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002280 [exp] 163 / 1e-46 AT1G71090 324 / 9e-109 Auxin efflux carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [poplar] [flax] CPA_AT PF03547 [poplar] [flax] Mem_trans Membrane transport protein
Representative CDS sequence Show only first row Show all	>Potri.006G112200.1 pacid=42768683 polypeptide=Potri.006G112200.1.p locus=Potri.006G112200 ID=Potri.006G112200.1.v4.1 annot-version=v4.1 ATGGAGAGATTCTTATCAGCTATGGTACCCGTGGGAAACCAGGCCGGAGGACAGTCGCTCTTAAACACCATCAAAATTGCTGTTCTGCCTATAGCCAAAG TTTTTACCATGTGCTTCTTGGGATTTCTTATGGCCTCCAAGTATGTTAACATCTTGCCAGCTAGTGGAAGGAAACTCTTAAATGGGCTGGTTTTTTCGCT TCTGCTACCTTGCTTGATATTTTCTCAACTTGGCCAAGCTGTCACTTTAGAGAAAATGTTGGAGTGGTGGTTTATTCCCATGAATGTTGTTCTTGGCTCC ATATCTGGCTCAATAATAGGTTTTGTTGTTGCATCCATTGTCCGGCCACCTTACCCATTCTTCAAGTTTTCAATCATACAAATCGGAATTGGGAATATTG GGAATGTGCCACTTGTCTTGATTGCAGCTCTATGTAGAGATACATCCAACCCTTTTGGCGACTCAGAAAAATGTAGCACAGATGGGACTGCCTACATCTC ATTTGGCCAGTGGGTTGGTGCAATCATTTTATACACATATGTATTTAACATGTTGGCGCCTCCACCGGAAGTTACCTTCGATATTGAGGATGCGAATCTT TCCATCAAGAGCCCAGCAAAAGATGCTCCCCCTGAGCAAGTCCCATTGCTTCTCCAGGAGGATGCACCAGAAGAATTGGATGCGCTAAAGAGAGGGAAGA TTAAACAATTTCTGGTCTTTCTCTATGTCAAATTGAAGCTCAAGCAAATTCTTCAGCCCCCTATCATTGCTTCTATCCTAGCTATGTTCCTTGGCGCAGT ACCATTTTTGAAGCGATCGATCTTTACAACTGATGCTCCACTTTTCTTTTTCACTGACAGCTGTATGATTCTCGGGGAGGCCATGATTCCATGCATTTTG TTGGCACTAGGAGGCAATCTCATTGATGGACCGGGAAGTTCTAAACTTGGTTTTCGGACAACTGCCGCTATTATTTTTGGTCGGTTAGTTTTGGTGCCTC CTGCTGGACTTGGCATAGTTACATTGGCTGATAAGCTTGGCTTCCTCCCTCCTGGTGATAAGATGTTCAAGTTTGTCCTGCTTCTGCAACATACAATGCC TACATCTGTCCTTTCTGGTGCCGTGGCCAATCTAAGAGGCTGTGGAAGAGAAGCTGCTGCTGTTCTATTCTGGGTTCATATTTTTGCTATTTTTTCAATG GCTGGATGGATTGTCCTTTATCTCAACTTACTGTTCTGA
AA sequence Show only first row Show all	>Potri.006G112200.1 pacid=42768683 polypeptide=Potri.006G112200.1.p locus=Potri.006G112200 ID=Potri.006G112200.1.v4.1 annot-version=v4.1 MERFLSAMVPVGNQAGGQSLLNTIKIAVLPIAKVFTMCFLGFLMASKYVNILPASGRKLLNGLVFSLLLPCLIFSQLGQAVTLEKMLEWWFIPMNVVLGS ISGSIIGFVVASIVRPPYPFFKFSIIQIGIGNIGNVPLVLIAALCRDTSNPFGDSEKCSTDGTAYISFGQWVGAIILYTYVFNMLAPPPEVTFDIEDANL SIKSPAKDAPPEQVPLLLQEDAPEELDALKRGKIKQFLVFLYVKLKLKQILQPPIIASILAMFLGAVPFLKRSIFTTDAPLFFFTDSCMILGEAMIPCIL LALGGNLIDGPGSSKLGFRTTAAIIFGRLVLVPPAGLGIVTLADKLGFLPPGDKMFKFVLLLQHTMPTSVLSGAVANLRGCGREAAAVLFWVHIFAIFSM AGWIVLYLNLLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01990			Auxin efflux carrier family pr...		Potri.006G112200 [exp]	0	1
AT5G28840		GME	"GDP-D-mannose 3',5'-epimerase...		Potri.005G053000 [exp]	12.96	0.8580
AT4G24340			Phosphorylase superfamily prot...		Potri.013G082700 [exp]	14.49	0.8776
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Potri.001G109700 [exp]	26.32	0.8737
AT5G18080		SAUR24	small auxin up RNA 24, SAUR-li...		Potri.004G165400 [exp]	28.56	0.8726
AT1G34640			peptidases (.1)		Potri.002G096700 [exp]	33.91	0.8685
					Potri.001G259220 [exp]	35.00	0.8649
AT5G65940		CHY1	beta-hydroxyisobutyryl-CoA hyd...		Potri.018G004100 [exp]	38.18	0.8655
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.013G115900 [exp]	42.14	0.8648
AT5G65940		CHY1	beta-hydroxyisobutyryl-CoA hyd...		Potri.018G004150 [exp]	47.22	0.8640
					Potri.001G259212 [exp]	47.95	0.8572

Compare expression of checked genes

Potri.006G112200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.