Plant FIBer expression Database

Potri.006G112400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G141900
[exp]
422 / 2e-148 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.006G112400.1 pacid=42769467 polypeptide=Potri.006G112400.1.p locus=Potri.006G112400 ID=Potri.006G112400.1.v4.1 annot-version=v4.1
ATGGCAAATATCACATACAGAGATCCAGAGCTGGAAGAGAGTTTCTCCTTCAGTGGCTGCTATGACTTCAACTCACCATTCCAATCAATCTTCTTCGATG
AGAGCGACGACGAGAGCTACATTGAAATAGCCCTTGAACCCTCCCTGAAAAATGGTCATGGAGGTATTAATTGCTGGGCTGATGAGGAAATGGAGCTCCG
TATATCATTTTCATCTAGTGCTCCCTTCCAAGAACTCTCCACCAAAAAAATCAGTAATGAGCATGAGTCTGCGGCCACAATGCCATCGTCTCCATCATCA
ACAACATTCACAATGAGCTCTTCTTCTCCTTCCATGGAGAGTGGTCAACGGGATGCACAAATGGGGTCCAAGGCTTCTTCTTCTACTTGTAGAGCCCAAA
AGGCCATTAAAAAGAAGGTGCAGTTCCCTAAAGTGAACAGTTTTCTCAATATGTTAAAGCCCAGTTTGACGGTATCATCCGAGGCCGATGATGGAAATGG
CCGTCCGGCTAACAACAATCATTTGGAGCTTGTAAGCAGCAGCACCATGAAAGGATCAAAGGCAACGGCCATGAGCAGTAATGGGATCGTGATGAAGTTC
TTGATCAAATTTCGAACCTTGAAGATTCGAACTCTGCTTGCATCATTTATGAAGTCCTGCCAAGTGATTAACTCCCCCCAAGAGCCGAGGAATACTGGGA
CACACCAGAAGCTAATGAATCCATTTGATAAATGGTTTGCGCCAGGAAGTAGCAGCAGCAACGTCTACTCAAACAACCTCTTTGGAGACGGTGAGAGGTC
AGGAGTATTGGAGATGAAAATGGATACAGTTAGAGCAGTTGTGGAAACGATGAGTAGCAGCAGCAGCATTGGTCGCGAAGATAGAAAATTTAGAAGTTGC
CCAAGCCCTACAAAATCCTCCCCAGTTCATCAAGAACTCTCAAGTGATGATCAGAATCATAAAATATGTGCTAAAGATAACTCAATTCAGGCGGCTATTG
CTCATTGTAAGAGATCATTTGGTCCAAAAATTGTCTGA
AA sequence
>Potri.006G112400.1 pacid=42769467 polypeptide=Potri.006G112400.1.p locus=Potri.006G112400 ID=Potri.006G112400.1.v4.1 annot-version=v4.1
MANITYRDPELEESFSFSGCYDFNSPFQSIFFDESDDESYIEIALEPSLKNGHGGINCWADEEMELRISFSSSAPFQELSTKKISNEHESAATMPSSPSS
TTFTMSSSSPSMESGQRDAQMGSKASSSTCRAQKAIKKKVQFPKVNSFLNMLKPSLTVSSEADDGNGRPANNNHLELVSSSTMKGSKATAMSSNGIVMKF
LIKFRTLKIRTLLASFMKSCQVINSPQEPRNTGTHQKLMNPFDKWFAPGSSSSNVYSNNLFGDGERSGVLEMKMDTVRAVVETMSSSSSIGREDRKFRSC
PSPTKSSPVHQELSSDDQNHKICAKDNSIQAAIAHCKRSFGPKIV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.006G112400
[exp]
0 1
AT1G34350 unknown protein Potri.019G085500
[exp]
2.44 0.9202
AT5G12250 TUB6 beta-6 tubulin (.1) Potri.006G035400
[exp]
4.12 0.9253 TUB17,TUB6.1
AT5G16590 LRR1 Leucine rich repeat protein 1,... Potri.017G130600
[exp]
5.47 0.9176
AT5G25240 unknown protein Potri.006G259300
[exp]
7.48 0.9081
AT4G15830 ARM repeat superfamily protein... Potri.008G221900
[exp]
8.12 0.9050
AT1G48880 TBL7 TRICHOME BIREFRINGENCE-LIKE 7 ... Potri.002G071900
[exp]
8.24 0.9182
Potri.013G156300
[exp]
8.83 0.9011
AT3G58600 Adaptin ear-binding coat-assoc... Potri.013G117900
[exp]
9.89 0.9101
AT3G50760 GATL2 galacturonosyltransferase-like... Potri.007G031700
[exp]
10.95 0.9034
AT3G23410 ATFAO3 ARABIDOPSIS FATTY ALCOHOL OXID... Potri.010G069100
[exp]
11.48 0.8454

Potri.006G112400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.