Plant FIBer expression Database

Potri.006G112600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G28330 59 / 4e-11 unknown protein
AT1G08035 42 / 6e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G142100
[exp]
368 / 2e-131 AT2G28330 56 / 4e-10 unknown protein
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.006G112600.1 pacid=42768860 polypeptide=Potri.006G112600.1.p locus=Potri.006G112600 ID=Potri.006G112600.1.v4.1 annot-version=v4.1
ATGGATTCTGAATCTTGTACGGACAAAACAAACAAAACCCAAGATGAGCAAGCTAACAAGGCCAATGTTGAGCCATCTCTAGGTCCAATCACTCCTGATT
CCAGCAAAGAGAGTGGGGATATTCCACTCTTTTCAGTCACTTTAGTTAAAAAACTGCCCAAAGTTCTCTCCTTCACTTCTAAAACCAACAGAAATGAGGA
CCTTTTTGACAATTTTAGCAGCCCGCGAACACCCCAAGATGGTGTTTTTGACCCATTCGCTCCGAGTCATGAAGACAACGCCTTGGCTCCTCAGTGTAAG
AAATACTACGATGAAGCTAGGGCCAGTGTTGCATGCCGGCTTAATTTTACTTCTTCCCTTAGAGCCTTCAGAAATGGGAGTTTTGGTGATGATGTGGAGT
TCTTATCGGATGAAGAGATGTTTGAATCTGTGTATGAAAGTCTTTTGGAAGCTATTGTTTTGAAGCAAACTGAAGGTGCTCTTGAAGAAATGTCAAAATT
GGAATGCGGTTCTGATGATTGCACAACACCTCCTGCAGCTCCTAAACTAACCAGAGTTCCTGATACTTGTCCCGGCGCTCCTCTGAAGCAAAAAGGTAAA
TCGAGGATTATTGATTTGGGATTATGCAGAAAGCTTGAATTCTAA
AA sequence
>Potri.006G112600.1 pacid=42768860 polypeptide=Potri.006G112600.1.p locus=Potri.006G112600 ID=Potri.006G112600.1.v4.1 annot-version=v4.1
MDSESCTDKTNKTQDEQANKANVEPSLGPITPDSSKESGDIPLFSVTLVKKLPKVLSFTSKTNRNEDLFDNFSSPRTPQDGVFDPFAPSHEDNALAPQCK
KYYDEARASVACRLNFTSSLRAFRNGSFGDDVEFLSDEEMFESVYESLLEAIVLKQTEGALEEMSKLECGSDDCTTPPAAPKLTRVPDTCPGAPLKQKGK
SRIIDLGLCRKLEF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G28330 unknown protein Potri.006G112600
[exp]
0 1
AT4G04885 PCFS4 PCF11P-similar protein 4 (.1) Potri.007G134000
[exp]
7.87 0.7008
AT5G54165 unknown protein Potri.015G004800
[exp]
13.22 0.6357
AT1G01550 BPS1 BYPASS 1, Protein of unknown f... Potri.010G171000
[exp]
16.79 0.6666
AT5G51990 AP2_ERF CBF4, DREB1D DEHYDRATION-RESPONSIVE ELEMENT... Potri.015G136400
[exp]
21.90 0.6315
AT5G67250 VFB4, SKIP2 VIER F-BOX PROTEINE 4, SKP1/AS... Potri.007G048101
[exp]
31.11 0.6538
AT5G58430 ATEXO70B1 exocyst subunit exo70 family p... Potri.019G124000
[exp]
33.16 0.5566
AT3G03280 unknown protein Potri.006G105600
[exp]
37.22 0.6416
AT5G67250 VFB4, SKIP2 VIER F-BOX PROTEINE 4, SKP1/AS... Potri.005G141800
[exp]
37.48 0.6474 SKIP2.2
AT4G16820 PLA-I{beta]2 phospholipase A I beta 2, alph... Potri.003G081500
[exp]
37.74 0.6144
AT5G63130 Octicosapeptide/Phox/Bem1p fam... Potri.012G085000
[exp]
40.89 0.6205

Potri.006G112600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.