Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54190 814 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT2G38630 791 / 0 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G142600 [exp] 894 / 0 AT3G54190 837 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G064100 [exp] 790 / 0 AT3G54190 812 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.013G091700 [exp] 756 / 0 AT3G54190 764 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.013G091800 [exp] 707 / 0 AT3G54190 722 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.013G091600 [exp] 327 / 5e-111 AT3G54190 338 / 8e-116 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035613 [exp] 737 / 0 AT3G54190 754 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10003237 [exp] 731 / 0 AT3G54190 751 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G113000.1 pacid=42770111 polypeptide=Potri.006G113000.1.p locus=Potri.006G113000 ID=Potri.006G113000.1.v4.1 annot-version=v4.1 ATGATGGAAGGGAGGAGGATATCAGCAGCGAATCCAAGGCCGTGCTCAGGGAGAAGGATATTAGCAGCGAAGAAACGGGGTCGTTCTGATGGGTTCTTAA ACAGTGTTAAAAAGCTTCAAAGAAGAGAGATTTCTTCTAAACCAGATCGTTCTTTCAGCATCACCAATGCCCAAGAGAGATTTCGCAATATGCGTTTGAT GGAAGAATACGATACTCATGATCCGAAGGGCCATTGTTCAGTGGTACTACCTTTTTTGATGAAGAGAACAAAAGTTATTGAGATTGTCGCCGCACAAGAC ATCATCTTTGCTCTTGCACATTCTGGTGTGTGTGCTGCTTTTAGTAGAGTGACAAATCATAGGATATGTTTTTTGAATGCGAGTCCTGATGAAGTCATTC TAAGCTTGTTCTACAATAAAAACAATGATTCTGTCATCACTGTTTCTGTCTATGCATCAGACAACTTCAGCTCCTTGAAATGCAGATCAACAAGAATTGA GTACATTCGAAGGGGTAATCCAGATGCAGGTTTTGCTCTGTTTGAGTCTGAATCCTTGAAGTGGCCAGGTTTTGTAGAGTTTGATGATGTCAATGGAAAG GTGCTAACATACTCAGCACAAGATAGTATGTACAAGGTTTTTGACCTAAAAAACTACACTATGCTGTACTCTATATCAGATAAAGATGTACAAGAAATCA AGATCAGTCCAGGCATCATGTTATTGATTTTGAATAGATCAAGCAGCTATGTTCCTCTTAAGATTTTGTCAATAGAAGATGGCACAATTCTCAAAGATTT CCATCATCTGCTTCATCGAAATAAGAAGGTGGACTTCATCGAGCAATTTAATGAAAAGCTTCTTGTCAAGCAGGAAAATGAGAATCTCCAGATTCTTGAT GTTCGACATACCGGTATTAGGGAAGTTAGCAGAACTGAGTTCTTGACACCATCAGCATTTATCTTCCTGTATGAAAACCAGTTGTTCTTAACATTCAGAA ATAGAACTGTTGCTGTTTGGAATTTTCGTGGAGAGCTTGTTACTTCATTTGAGGATCATCTCTTATGGCGTCCTGACTGTAACACAAATAACACATACAT AACAAGTGACCAGGATCTTATCATTTCATACTGCAAGGCTGAATCTGATGACCAGTGGATGGAAGGAAATGGTGGTTCTATCAATATCAGCAATATCCTG ACAGGAAAATGCCTAGCTAAAATAAATGCCACCAATGGCAGTCCCAAGGATGAGGAGTGCTGCAGCAGTACTGGAAGCTCAAAGCAGAGCTGCTCCCTGA TGAAAAGCACAGTTGCAGAAGCCTTGGAAGACATCACTGCCCTTTTCTACGATGAAGATCGCAATGAAATCTACACCGGTAATAGGCATGGTCTAGTTCA TGTGTGGTCAAACTAA
AA sequence Show only first row Show all	>Potri.006G113000.1 pacid=42770111 polypeptide=Potri.006G113000.1.p locus=Potri.006G113000 ID=Potri.006G113000.1.v4.1 annot-version=v4.1 MMEGRRISAANPRPCSGRRILAAKKRGRSDGFLNSVKKLQRREISSKPDRSFSITNAQERFRNMRLMEEYDTHDPKGHCSVVLPFLMKRTKVIEIVAAQD IIFALAHSGVCAAFSRVTNHRICFLNASPDEVILSLFYNKNNDSVITVSVYASDNFSSLKCRSTRIEYIRRGNPDAGFALFESESLKWPGFVEFDDVNGK VLTYSAQDSMYKVFDLKNYTMLYSISDKDVQEIKISPGIMLLILNRSSSYVPLKILSIEDGTILKDFHHLLHRNKKVDFIEQFNEKLLVKQENENLQILD VRHTGIREVSRTEFLTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWRPDCNTNNTYITSDQDLIISYCKAESDDQWMEGNGGSINISNIL TGKCLAKINATNGSPKDEECCSSTGSSKQSCSLMKSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54190			Transducin/WD40 repeat-like su...		Potri.006G113000 [exp]	0	1
AT5G03330			Cysteine proteinases superfami...		Potri.016G094700 [exp]	1.41	0.8492
AT4G21160		ZAC, AGD12	ARF-GAP domain 12, Calcium-dep...		Potri.011G098500 [exp]	9.48	0.8465
AT1G16220			Protein phosphatase 2C family ...		Potri.001G473300 [exp]	12.24	0.8410
AT4G14010		RALFL32	ralf-like 32 (.1)		Potri.001G321300 [exp]	14.69	0.8280
AT2G04845			Acyl-CoA N-acyltransferases (N...		Potri.014G161800 [exp]	15.16	0.8066
AT5G40740			unknown protein		Potri.001G337600 [exp]	15.68	0.7759
AT1G61250		SC3	secretory carrier 3 (.1.2)		Potri.004G036600 [exp]	17.20	0.8395
AT5G51150			Mitochondrial import inner mem...		Potri.012G113700 [exp]	18.54	0.7914
AT5G43270	SBP	SPL2	squamosa promoter binding prot...		Potri.001G055900 [exp]	21.33	0.8224
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Potri.007G046700 [exp]	33.63	0.8025	Pt-KICP.1

Compare expression of checked genes

Potri.006G113000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.