Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39840 485 / 3e-174 TOPP4 type one serine/threonine protein phosphatase 4 (.1) AT5G59160 483 / 1e-173 PPO, TOPP2 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) AT1G64040 483 / 2e-173 TOPP3 type one serine/threonine protein phosphatase 3 (.1) AT4G11240 481 / 1e-172 TOPP7 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT2G29400 480 / 3e-172 PP1-AT, TOPP1 type one protein phosphatase 1 (.1) AT3G46820 476 / 8e-171 TOPP5 type one serine/threonine protein phosphatase 5 (.1) AT5G43380 469 / 2e-167 TOPP6 type one serine/threonine protein phosphatase 6 (.1.2.3) AT5G27840 465 / 3e-166 TOPP8 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2) AT3G05580 460 / 3e-164 TOPP9 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT5G55260 271 / 4e-90 EP128, PPX-2, PPX2 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G142700 [exp] 588 / 0 AT2G39840 493 / 1e-177 type one serine/threonine protein phosphatase 4 (.1) Potri.001G245700 [exp] 492 / 9e-177 AT2G29400 556 / 0.0 type one protein phosphatase 1 (.1) Potri.019G018000 [exp] 492 / 1e-176 AT2G39840 554 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.013G045900 [exp] 491 / 2e-176 AT2G39840 564 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.010G197600 [exp] 489 / 9e-176 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.008G166300 [exp] 489 / 1e-175 AT2G39840 545 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.008G060800 [exp] 486 / 1e-174 AT2G39840 594 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.009G037700 [exp] 482 / 6e-173 AT5G59160 553 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Potri.001G098600 [exp] 479 / 7e-172 AT4G11240 582 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042559 [exp] 488 / 1e-174 AT2G39840 564 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10004692 [exp] 486 / 1e-174 AT2G39840 596 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10022019 [exp] 490 / 2e-174 AT2G39840 565 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10040259 [exp] 486 / 2e-174 AT2G39840 590 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10001025 [exp] 483 / 2e-173 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10030163 [exp] 483 / 2e-173 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10016489 [exp] 481 / 2e-172 AT5G59160 570 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10004989 [exp] 480 / 4e-172 AT5G59160 565 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10021872 [exp] 472 / 9e-169 AT2G39840 523 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10011827 [exp] 470 / 1e-167 AT2G39840 513 / 0.0 type one serine/threonine protein phosphatase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [poplar] [flax] Calcineurin PF00149 [poplar] [flax] Metallophos Calcineurin-like phosphoesterase CL0163 [poplar] [flax] PF16891 [poplar] [flax] STPPase_N Serine-threonine protein phosphatase N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.006G113100.2 pacid=42767060 polypeptide=Potri.006G113100.2.p locus=Potri.006G113100 ID=Potri.006G113100.2.v4.1 annot-version=v4.1 ATGTTAGTTGATAAAAGGAGGGAGAAGGGAAGGAAGGAAGAAAGGGTTGGAATGAATGGATTGGAAGGGCTTATACTCAGGCTGTTGGAAGCAAGGAGTG ATAGAGGGAAACGCATCCAGCTGACTGAACCTGAAATCCGCCAACTTTGTGTCACCGCCAAGCAAGTCTTTCTTGCACAACCTGTTCTTCTTGAATTGGA AGCTCCCATCAATATCTGTGTGTTTTGGTTGTATGCAGGTGATATACATGGCCAATATCCAGATCTCTTGCGATTGTTTGAGTATGGTGGGTTTCCACCA GATTCCAATTATCTATTTCTTGGAGACTACGTAGATAGAGGAAAACAAAGTATAGAGACTATATGCCTTCTCCTTGCCTACAAGATCAAGTTCCCAGACA ACTTTTTCCTTCTTCGAGGGAACCATGAATGTGCTTCTATCAACAGAATATATGGATTTTATGATGAGTGCAAGCGTCGTTTCAGTGTCCGTCTATGGAA GATTTTCACAGACTGCTTCAATTGTTTACCGGTGGCTGCAGTTGTCGATGACAAAATCCTATGCATGCATGGTGGACTCTCACCAGAAATGGATAACTTG GATCAGATCAGAGCTATAGAAAGGCCAGCAGATGTGCCAGACCAGGGTATTCTGTGTGACCTCCTTTGGGCAGATCCTGATAGAAACATCAAGGGCTGGG GTGATAATGATAGGGGTGTCTCCTACACCTTTGGAGCCGATAAGGTCGCTGAGTTCTTAAAGAAACATGACCTCGATCTCATATGCCGAGCCCACCAGGT TGTTGAGGATGGCTATGAATTCTTCGCAGACAGACAGCTGGTTACCATATTCTCAGCACCAAACTACTGTGGAGAGTTCAACAATGCAGGTGCATTTATG TGGGTTGATGCGAGTTTGCTCTGCTCATTTCAGATTCTGAAGCCATGGAGAGGTAGAGAAGGGCATCCTGAATAG
AA sequence Show only first row Show all	>Potri.006G113100.2 pacid=42767060 polypeptide=Potri.006G113100.2.p locus=Potri.006G113100 ID=Potri.006G113100.2.v4.1 annot-version=v4.1 MLVDKRREKGRKEERVGMNGLEGLILRLLEARSDRGKRIQLTEPEIRQLCVTAKQVFLAQPVLLELEAPINICVFWLYAGDIHGQYPDLLRLFEYGGFPP DSNYLFLGDYVDRGKQSIETICLLLAYKIKFPDNFFLLRGNHECASINRIYGFYDECKRRFSVRLWKIFTDCFNCLPVAAVVDDKILCMHGGLSPEMDNL DQIRAIERPADVPDQGILCDLLWADPDRNIKGWGDNDRGVSYTFGADKVAEFLKKHDLDLICRAHQVVEDGYEFFADRQLVTIFSAPNYCGEFNNAGAFM WVDASLLCSFQILKPWRGREGHPE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39840		TOPP4	type one serine/threonine prot...		Potri.006G113100 [exp]	0	1
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Potri.005G175500 [exp]	10.39	0.6138	Pt-PT2.7,PtrPht1-6
AT2G41550			Rho termination factor (.1)		Potri.006G046700 [exp]	23.81	0.6583
AT2G16370		THY-1	thymidylate synthase 1 (.1)		Potri.004G157400 [exp]	36.98	0.6542	DHFR-TS-1,THY.3
					Potri.017G045900 [exp]	43.16	0.6336
AT1G55790			Domain of unknown function (DU...		Potri.003G101200 [exp]	47.54	0.6419
AT3G21710			unknown protein		Potri.002G230300 [exp]	54.25	0.6469
AT2G19070		SHT	spermidine hydroxycinnamoyl tr...		Potri.006G165200 [exp]	62.60	0.6386
AT3G18650	MADS	AGL103	AGAMOUS-like 103 (.1)		Potri.008G020300 [exp]	72.74	0.6261
AT3G03250		AtUGP1, UGP1, U...	UDP-GLUCOSE PYROPHOSPHORYLASE ...		Potri.013G070001 [exp]	76.68	0.6225
					Potri.001G103200 [exp]	85.48	0.6241

Compare expression of checked genes

Potri.006G113100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.