Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38620 545 / 0 CDKB1;2 cyclin-dependent kinase B1;2 (.1.2) AT3G54180 538 / 0 CDC2B, CDKB1;1 CDC2-LIKE GENE, cyclin-dependent kinase B1;1 (.1) AT1G20930 413 / 8e-146 CDKB2;2 cyclin-dependent kinase B2;2 (.1) AT1G76540 406 / 6e-143 CDKB2;1 cyclin-dependent kinase B2;1 (.1) AT3G48750 347 / 4e-120 CDKA1, CDC2A, CDKA;1, CDC2AAT, CDK2 cell division control 2 (.1) AT1G66750 235 / 2e-75 CDKD1;2, CAK4AT, AT;CDKD;2, CDKD;2 CYCLIN-DEPENDENT KINASE D1;2, CDK-activating kinase 4 (.1) AT1G67580 243 / 3e-74 CDKG;2 Protein kinase superfamily protein (.1.2) AT1G18040 231 / 3e-73 CDKD1;3, AT;CDCKD;3, CAK2AT cyclin-dependent kinase D1;3 (.1) AT1G73690 226 / 2e-71 CDKD1;1, AT;CDKD;1, CAK3AT cyclin-dependent kinase D1;1 (.1) AT5G63370 226 / 2e-70 CDKG;1 Protein kinase superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G142800 [exp] 585 / 0 AT2G38620 536 / 0.0 cyclin-dependent kinase B1;2 (.1.2) Potri.005G257500 [exp] 420 / 1e-148 AT1G76540 552 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.002G003400 [exp] 414 / 5e-146 AT1G76540 553 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.004G133500 [exp] 356 / 1e-123 AT3G48750 540 / 0.0 cell division control 2 (.1) Potri.010G056900 [exp] 250 / 5e-77 AT1G67580 864 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G008400 [exp] 234 / 2e-75 AT3G48750 293 / 3e-99 cell division control 2 (.1) Potri.008G178200 [exp] 244 / 1e-74 AT1G67580 858 / 0.0 Protein kinase superfamily protein (.1.2) Potri.015G092100 [exp] 242 / 3e-74 AT1G67580 588 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G094600 [exp] 236 / 9e-73 AT1G67580 574 / 0.0 Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003236 [exp] 511 / 0 AT2G38620 493 / 2e-176 cyclin-dependent kinase B1;2 (.1.2) Lus10035614 [exp] 503 / 2e-180 AT2G38620 485 / 1e-173 cyclin-dependent kinase B1;2 (.1.2) Lus10021611 [exp] 400 / 2e-140 AT1G76540 531 / 0.0 cyclin-dependent kinase B2;1 (.1) Lus10040593 [exp] 399 / 2e-140 AT1G76540 534 / 0.0 cyclin-dependent kinase B2;1 (.1) Lus10038755 [exp] 305 / 6e-104 AT3G48750 468 / 7e-169 cell division control 2 (.1) Lus10038754 [exp] 268 / 5e-89 AT3G48750 407 / 2e-144 cell division control 2 (.1) Lus10015816 [exp] 245 / 7e-75 AT1G67580 892 / 0.0 Protein kinase superfamily protein (.1.2) Lus10026790 [exp] 238 / 9e-75 AT5G10270 675 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10036995 [exp] 243 / 2e-74 AT1G67580 897 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036106 [exp] 236 / 9e-74 AT5G10270 689 / 0.0 cyclin-dependent kinase C;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.006G113200.4 pacid=42769769 polypeptide=Potri.006G113200.4.p locus=Potri.006G113200 ID=Potri.006G113200.4.v4.1 annot-version=v4.1 ATGGAAAAGTATGAGAAACTGGAGAAGGTAGGCGAAGGCACATACGGCAAAGTGTACAAAGCCAAAGACAAAGTAACAGGGCAAATAGTCGCCCTCAAGA AAACACGACTTGAAATGGACGAAGAAGGCGTTCCTCCTACCGCTCTTCGCGAGGTTTCTCTCCTTCAAATGCTCTCTCAATCTCTCTACGTCGTCCGCCT CCTCTCCGTCGAACACGTTGACGCCAATAGCACCAACTCCAATCTTGATGACTCCAATCCCTCTAAGCGCAACCACAACAACAACAACAAATCCAATCTC TACTTGGTTTTCGAATATCTCGACACGGATCTCAAGAAATTCATCGATTCTCACCGCAAAGGTGCCAACCCTAGGCCTCTCTCGCCTTCGCTGATACAGA GTTTTCTCTTCCAGCTTTGCAAGGGAGTTGCTCACTGTCACAGCCACGGTGTGCTTCACCGCGATCTCAAGCCTCAGAATCTGCTTCTTGATCAGGAGAA AGGGATTCTTAAGATTGCTGATTTGGGATTAGGTCGTGCTTTTACCGTGCCTCTTAAGAGTTATACCCACGAGATTGTTACTCTTTGGTATAGGGCTCCC GAGGTGTTGCTTGGTTCCACTCATTATTCCACTGGCGTCGATATGTGGTCCGTCGGTTGCATCTTCGCTGAAATGTCAAGAAGGCAAGCTCTGTTTCCCG GTGACTCAGAGTTTCAACAGTTGCTTCATATTTTCAGGTTGCTGGGAACACCGACTGAAGAGCAGTGGCCAGGAGTTACTGCTCTCAGAGATTGGCATGT CTATCCGAAATGGGAGCCTCAAAACCTTGCACGGGTTGTCCAGTCACTGGGACCTGAAGGGGTGGACCTCTTATCGAAGATGCTCAAGTATGATCCAGCT GAAAGGATCTCGGCCAAAGCAGCCATGGATCATCCCTATTTCGACAGCCTTGACAAGTCTCAATTCTGA
AA sequence Show only first row Show all	>Potri.006G113200.4 pacid=42769769 polypeptide=Potri.006G113200.4.p locus=Potri.006G113200 ID=Potri.006G113200.4.v4.1 annot-version=v4.1 MEKYEKLEKVGEGTYGKVYKAKDKVTGQIVALKKTRLEMDEEGVPPTALREVSLLQMLSQSLYVVRLLSVEHVDANSTNSNLDDSNPSKRNHNNNNKSNL YLVFEYLDTDLKKFIDSHRKGANPRPLSPSLIQSFLFQLCKGVAHCHSHGVLHRDLKPQNLLLDQEKGILKIADLGLGRAFTVPLKSYTHEIVTLWYRAP EVLLGSTHYSTGVDMWSVGCIFAEMSRRQALFPGDSEFQQLLHIFRLLGTPTEEQWPGVTALRDWHVYPKWEPQNLARVVQSLGPEGVDLLSKMLKYDPA ERISAKAAMDHPYFDSLDKSQF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38620		CDKB1;2	cyclin-dependent kinase B1;2 (...		Potri.006G113200 [exp]	0	1
AT5G67270		ATEB1C, ATEB1H1	ATEB1-HOMOLOG1, MICROTUBULE EN...		Potri.007G048700 [exp]	1.73	0.9592
AT4G13370			Plant protein of unknown funct...		Potri.018G072500 [exp]	6.00	0.9580
AT3G19184	B3		AP2/B3-like transcriptional fa...		Potri.018G140700 [exp]	6.48	0.9344
AT1G76540		CDKB2;1	cyclin-dependent kinase B2;1 (...		Potri.005G257500 [exp]	8.66	0.9461	CDKB2.2
AT5G06590			unknown protein		Potri.016G064200 [exp]	9.48	0.9302
AT5G67270		ATEB1C, ATEB1H1	ATEB1-HOMOLOG1, MICROTUBULE EN...		Potri.005G142200 [exp]	10.00	0.9457
AT1G08560		KN, ATSYP111, S...	KNOLLE, syntaxin of plants 11...		Potri.013G053200 [exp]	10.95	0.9394	Pt-SYP111.1
AT2G42260		PYM, UVI4	POLYCHOME, uv-b-insensitive 4 ...		Potri.006G057800 [exp]	13.41	0.9194
AT1G53140		DRP5A	Dynamin related protein 5A (.1...		Potri.011G118500 [exp]	13.41	0.9263
AT2G29570		ATPCNA2, PCNA2	A. THALIANA PROLIFERATING CELL...		Potri.009G040900 [exp]	14.24	0.8258	Pt-PCNA.1

Compare expression of checked genes

Potri.006G113200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.