Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08590 989 / 0 iPGAM2 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2) AT1G09780 978 / 0 iPGAM1 2,3-biphosphoglycerate-independent phosphoglycerate mutase 1, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G142900 [exp] 1086 / 0 AT1G09780 927 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 1, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042283 [exp] 1048 / 0 AT3G08590 993 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2) Lus10026370 [exp] 1047 / 0 AT3G08590 992 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2) Lus10031877 [exp] 1028 / 0 AT3G08590 979 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2) Lus10031309 [exp] 1025 / 0 AT3G08590 977 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0088 [poplar] [flax] Alk_phosphatase PF01676 [poplar] [flax] Metalloenzyme Metalloenzyme superfamily CL0088 [poplar] [flax] PF06415 [poplar] [flax] iPGM_N BPG-independent PGAM N-terminus (iPGM_N)
Representative CDS sequence Show only first row Show all	>Potri.006G113300.1 pacid=42768827 polypeptide=Potri.006G113300.1.p locus=Potri.006G113300 ID=Potri.006G113300.1.v4.1 annot-version=v4.1 ATGGGGAGCGCAGGACAGAACGCATGGAAATTGGCGGATCATCCTAAGCTTCCAAAGGGAAAGACTATCGCTATGGTGGTTTTGGATGGTTGGGGTGAGG CTAAACCCGATCAGTATAACTGTATCCATGTCGCCGATACTCCTACCATGGATTCCTTCAAAACTACTGCCCCTGAAAGATGGAGATTGATTAAGGCTCA TGGTACTGCTGTTGGGCTTCCAAGTGAGGATGACATGGGCAACAGTGAAGTTGGTCACAACGCTCTTGGTGCTGGTCGCATCTTTGCTCAGGGAGCGAAG CTTGTTGATCTTGCTCTTGCCTCTGGAAAAATCTATGACGGAGAGGGATTTAATTACATTAAACAATCTTTCGACAATGGCACGTTGCATCTCATTGGAC TATTGAGCGATGGTGGAGTTCACTCAAGGCTTGATCAGTTGCAGTTGTTGCTGAAAGGTGCTGCTGAACGCGGTGCTAAAAGAATCCGTGTTCACTTTCT TACTGATGGCCGTGATGTTTTAGACGGGTCAAGTGTTGGCTTTGTGGAGACTCTTGAGAAAGACCTGTCAAATTTACGTGAGAAAGCTGTTGATGCACAA ATTGCATCTGGTGGTGGGCGCATGTATGTCACAATGGACCGCTATGAGAATGATTGGAATGTGGTGAAACGAGGATGGGATGCCCAAGTACTTGGTGAAG CCCCATACAAGTTTAGAAGTGCTGTTGAAGCCGTCGAGAAACTGAGAGCAGAACCCAAGGCGAATGACCAGTACTTACCTCCTTTTGTCATTGTTGATGA GAGTGGAAATCCCGTGGGACCAATTAAGGATGGTGATGCTGTTGTCACTTTCAACTTCCGAGCAGATCGCATGACTATGCTTGCTAAGGCTCTTGAATAT GCGGATTTTGACAAATTTGATCGGGTTCGAGTCCCTAAAATTCATTATGCTGGAATGCTTCAATATGATGGTGAGTTGAAGCTTCCAAGCCAATACCTCG TTACTCCTCCTGAGATAGAAAGGACATCTGGTGAATACTTGGTGCATAATGGTGTTCGCACCTTTGCTTGCAGTGAGACTGTTAAATTTGGCCATGTCAC TTTCTTTTGGAATGGAAATCGTTCTGGTTATTTCAATGAAGAAATGGAGGAATACGTGGAGATTCCAAGTGATGTTGGAATTACATTCAATGTCCAACCT AAGATGAAGGCATTAGAGATTGCTGAAAAGGCAAGGGACGCCATCCTTAGTGGCAAATTTGACCAGGTTCGTGTCAATCTACCAAATGGTGACATGGTGG GACATACAGGAGACATTGAGGCCACTGTAGTGGCATGCAAGGCTGCTGATGGTGCTGTTCAGACGATCATCGATGCTATAGAGCAAGTTGGTGGAATCTA TGTAATTACTGCTGATCATGGCAATGCTGAAGACATGGTTAAGAGGGACAAGTCTGGTAAACCCCTTTTGGATAAAAGTGGCAAACTCCAGATACTCACT TCTCACACTCTTGAACCAGTGCCTATTGCAATTGGAGGCCCTGGATTGAAAGCTGGTGTCAGGTTCCGCAATGATGTTCCCACTGGTGGACTTGCCAATG TAGCAGCAACTGTGATCAATCTTCATGGATTTGAGGCTCCTAACGACTATGAGCCCACCCTCATTGAAGTTGTCGATAACTAG
AA sequence Show only first row Show all	>Potri.006G113300.1 pacid=42768827 polypeptide=Potri.006G113300.1.p locus=Potri.006G113300 ID=Potri.006G113300.1.v4.1 annot-version=v4.1 MGSAGQNAWKLADHPKLPKGKTIAMVVLDGWGEAKPDQYNCIHVADTPTMDSFKTTAPERWRLIKAHGTAVGLPSEDDMGNSEVGHNALGAGRIFAQGAK LVDLALASGKIYDGEGFNYIKQSFDNGTLHLIGLLSDGGVHSRLDQLQLLLKGAAERGAKRIRVHFLTDGRDVLDGSSVGFVETLEKDLSNLREKAVDAQ IASGGGRMYVTMDRYENDWNVVKRGWDAQVLGEAPYKFRSAVEAVEKLRAEPKANDQYLPPFVIVDESGNPVGPIKDGDAVVTFNFRADRMTMLAKALEY ADFDKFDRVRVPKIHYAGMLQYDGELKLPSQYLVTPPEIERTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFNEEMEEYVEIPSDVGITFNVQP KMKALEIAEKARDAILSGKFDQVRVNLPNGDMVGHTGDIEATVVACKAADGAVQTIIDAIEQVGGIYVITADHGNAEDMVKRDKSGKPLLDKSGKLQILT SHTLEPVPIAIGGPGLKAGVRFRNDVPTGGLANVAATVINLHGFEAPNDYEPTLIEVVDN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G08590		iPGAM2	2,3-biphosphoglycerate-indepen...		Potri.006G113300 [exp]	0	1
AT3G61140		EMB78, CSN1, CO...	EMBRYO DEFECTIVE 78, COP9 SIGN...		Potri.002G154500 [exp]	1.41	0.7701	EMB78.2
AT1G14000		VIK	VH1-interacting kinase (.1)		Potri.008G090800 [exp]	1.73	0.7203
AT5G03340			ATPase, AAA-type, CDC48 protei...		Potri.006G125500 [exp]	2.00	0.7510	CDC48.3
AT1G02100		SBI1	SUPPRESSOR OF BRI1, Leucine ca...		Potri.014G047300 [exp]	2.82	0.6818
AT5G33320		ARAPPT, CUE1	PHOSPHOENOLPYRUVATE/PHOSPHATE ...		Potri.012G082100 [exp]	5.00	0.6487
AT1G71080			RNA polymerase II transcriptio...		Potri.010G114900 [exp]	12.64	0.5900
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Potri.014G129200 [exp]	14.73	0.6249	UXS2.2
AT2G17200		DSK2	ubiquitin family protein (.1)		Potri.009G166000 [exp]	15.58	0.5672
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Potri.010G038400 [exp]	21.49	0.5703	ALPHA.8
AT1G09810		ECT11	evolutionarily conserved C-ter...		Potri.003G008400 [exp]	24.55	0.6011

Compare expression of checked genes

Potri.006G113300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.