Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01020 664 / 0 Protein kinase superfamily protein (.1) AT5G56460 460 / 4e-161 Protein kinase superfamily protein (.1) AT2G05940 459 / 6e-160 RIPK RPM1-induced protein kinase, Protein kinase superfamily protein (.1) AT2G07180 451 / 2e-157 Protein kinase superfamily protein (.1.2) AT5G35580 441 / 1e-152 Protein kinase superfamily protein (.1) AT2G26290 438 / 2e-152 ARSK1 root-specific kinase 1 (.1) AT1G61590 433 / 2e-150 Protein kinase superfamily protein (.1) AT5G15080 427 / 9e-147 Protein kinase superfamily protein (.1) AT3G28690 415 / 6e-144 Protein kinase superfamily protein (.1.2.3) AT3G01300 418 / 1e-143 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G143200 [exp] 791 / 0 AT5G01020 655 / 0.0 Protein kinase superfamily protein (.1) Potri.006G141500 [exp] 458 / 1e-159 AT2G05940 638 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.001G002300 [exp] 454 / 2e-159 AT5G56460 608 / 0.0 Protein kinase superfamily protein (.1) Potri.006G219300 [exp] 451 / 3e-157 AT2G05940 536 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.001G128500 [exp] 448 / 3e-156 AT1G61590 622 / 0.0 Protein kinase superfamily protein (.1) Potri.006G066100 [exp] 441 / 1e-153 AT5G15080 503 / 6e-177 Protein kinase superfamily protein (.1) Potri.003G105400 [exp] 439 / 8e-153 AT1G61590 597 / 0.0 Protein kinase superfamily protein (.1) Potri.004G129000 [exp] 441 / 1e-152 AT5G15080 659 / 0.0 Protein kinase superfamily protein (.1) Potri.003G222600 [exp] 437 / 1e-152 AT5G56460 585 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036762 [exp] 673 / 0 AT5G01020 672 / 0.0 Protein kinase superfamily protein (.1) Lus10034897 [exp] 451 / 3e-156 AT2G05940 636 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10040588 [exp] 447 / 2e-155 AT2G07180 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10033429 [exp] 447 / 1e-154 AT2G05940 636 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10013406 [exp] 439 / 5e-153 AT5G56460 630 / 0.0 Protein kinase superfamily protein (.1) Lus10030668 [exp] 439 / 1e-151 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1) Lus10006643 [exp] 437 / 1e-151 AT5G15080 495 / 2e-173 Protein kinase superfamily protein (.1) Lus10005255 [exp] 439 / 2e-151 AT5G15080 720 / 0.0 Protein kinase superfamily protein (.1) Lus10038087 [exp] 436 / 2e-151 AT5G15080 499 / 6e-175 Protein kinase superfamily protein (.1) Lus10033294 [exp] 432 / 1e-150 AT1G61590 552 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.006G113600.1 pacid=42769592 polypeptide=Potri.006G113600.1.p locus=Potri.006G113600 ID=Potri.006G113600.1.v4.1 annot-version=v4.1 ATGGGAAACTGCGGCACTAGAGAAGAGTCTGCCGTTGTCTCCACTGCTCAAGTTCAACAACAGCTTCACATAATTTCATCATCAGCATCAATTAAAAACG GTCAGTCAGACAAGAAGCATAGTAGGTCAGTTTCAGATCTGAGTGATCCTACTTCAACTCCACGCAACTTTGAGGACTCAAGAAAGAATGCCCTTCTTTA TACTCATGTTATAGCCTTCACTTTGTATGAGCTTGAGACAATTACCAAGAGTTTTCGCTCTGATTACATTCTTGGGGAAGGTGGATTTGGAACTGTTTAT AAAGGCTACATTGATGAGAATGTCAGGGTTGGCCTCAAATCTCTTCCAGTTGCTGTCAAGGTTCTCAATAAAGAGGGTCTTCAAGGCCATCGTGAATGGC TTACCGAAGTAAACTTTCTGGGGCAGCTTAGGCATCCTAATTTGGTGAAGTTGATTGGGTATTGTTGCGAGGATGATCACAGGTTACTTGTTTATGAGTT TATGTTCCGAGGAAGCCTTGAGAATCATCTATTTCGAAAAGCAACAGTTCCATTATCTTGGGCCACAAGAATGATGATAGCACTTGGAGCGGCTAAAGGG CTTGCTTTTCTTCACAATGCAGAAAGACCAGTTATATATAGGGACTTCAAAACTTCTAATATATTACTGGACTCTGATTATACTGCCAAGCTTTCTGATT TTGGGCTTGCAAAAGCTGGACCGCAAGGCGACGAGACTCATGTATCAACTCGAGTGATGGGTACCTATGGTTATGCTGCCCCTGAATATGTAATGACTGG CCACCTGACTGCAAGAAGCGATGTGTACAGTTTTGGAGTTGTTCTTCTGGAACTATTGACAGGAAGGAAGTCAGTTGACAAAACCAGACCCAGCAAGGAG CAGAGCTTGGTGGATTGGGCCCGTCCAAAATTGAATGATAAGAGAAAGTTGCTGCAAATAATTGACCCCAGATTAGAGAACCAGTACTCTGTAAGGGCAG CCCAGAAAGCCTGCAGCCTGGCATATTACTGTTTGAGCCAGAATCCAAAAGCAAGGCCCTTGATGAGTGATGTGGTTGAAACTTTGGAACCTCTACAATG CAGTGAAGTTTCATCATCACTGACCCCAGCCTTAACCGGTGGTGCTGTTGCATTTGCAATGGGAGGGGTACCTGATTACCGGATGCGTCATAGATTCACC AACAATGTTGGACCTGGTTCTAGTTGTCGGTCTCCTAATCCAAATTGCTCCCCAGGTGGCCCTGCAGCTTGCAGGGTCAGATAA
AA sequence Show only first row Show all	>Potri.006G113600.1 pacid=42769592 polypeptide=Potri.006G113600.1.p locus=Potri.006G113600 ID=Potri.006G113600.1.v4.1 annot-version=v4.1 MGNCGTREESAVVSTAQVQQQLHIISSSASIKNGQSDKKHSRSVSDLSDPTSTPRNFEDSRKNALLYTHVIAFTLYELETITKSFRSDYILGEGGFGTVY KGYIDENVRVGLKSLPVAVKVLNKEGLQGHREWLTEVNFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRKATVPLSWATRMMIALGAAKG LAFLHNAERPVIYRDFKTSNILLDSDYTAKLSDFGLAKAGPQGDETHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSVDKTRPSKE QSLVDWARPKLNDKRKLLQIIDPRLENQYSVRAAQKACSLAYYCLSQNPKARPLMSDVVETLEPLQCSEVSSSLTPALTGGAVAFAMGGVPDYRMRHRFT NNVGPGSSCRSPNPNCSPGGPAACRVR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01020			Protein kinase superfamily pro...		Potri.006G113600 [exp]	0	1
AT5G46860		SGR3, ATVAM3, A...	SHOOT GRAVITROPISM 3, ARABIDOP...		Potri.014G145200 [exp]	1.00	0.7484
AT1G03010			Phototropic-responsive NPH3 fa...		Potri.002G209700 [exp]	7.34	0.7238
AT1G47655	DOF		Dof-type zinc finger DNA-bindi...		Potri.014G036600 [exp]	14.28	0.6465
AT2G45530			RING/U-box superfamily protein...		Potri.001G452800 [exp]	14.28	0.6771
AT5G67130			PLC-like phosphodiesterases su...		Potri.007G045700 [exp]	21.90	0.6871
AT5G58490			NAD(P)-binding Rossmann-fold s...		Potri.009G076300 [exp]	30.06	0.6707	Pt-CCR.7
AT4G21450			PapD-like superfamily protein ...		Potri.019G116400 [exp]	30.65	0.6823
AT1G80120			Protein of unknown function (D...		Potri.006G113800 [exp]	32.17	0.6515
AT3G49290		ABIL2	ABL interactor-like protein 2 ...		Potri.012G016900 [exp]	32.72	0.5900
AT4G35300		TMT2	tonoplast monosaccharide trans...		Potri.005G098900 [exp]	35.41	0.6579

Compare expression of checked genes

Potri.006G113600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.