Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80120 111 / 4e-30 Protein of unknown function (DUF567) (.1) AT5G41590 106 / 4e-28 Protein of unknown function (DUF567) (.1) AT3G15810 97 / 1e-24 Protein of unknown function (DUF567) (.1) AT2G38640 93 / 3e-23 Protein of unknown function (DUF567) (.1) AT1G53900 69 / 2e-13 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) AT1G53880 69 / 2e-13 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) AT1G53870 61 / 5e-11 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT1G53890 61 / 5e-11 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2), Protein of unknown function (DUF567) (.3) AT3G14260 59 / 2e-10 Protein of unknown function (DUF567) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G143500 [exp] 369 / 7e-131 AT1G80120 105 / 7e-28 Protein of unknown function (DUF567) (.1) Potri.001G192000 [exp] 109 / 2e-29 AT3G15810 281 / 5e-97 Protein of unknown function (DUF567) (.1) Potri.003G032500 [exp] 106 / 3e-28 AT3G15810 264 / 2e-90 Protein of unknown function (DUF567) (.1) Potri.006G113400 [exp] 95 / 8e-24 AT2G38640 214 / 5e-71 Protein of unknown function (DUF567) (.1) Potri.001G098400 [exp] 96 / 9e-24 AT5G41590 201 / 3e-65 Protein of unknown function (DUF567) (.1) Potri.003G133200 [exp] 93 / 6e-23 AT5G41590 207 / 1e-67 Protein of unknown function (DUF567) (.1) Potri.016G131800 [exp] 91 / 3e-22 AT5G01750 213 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.006G067000 [exp] 85 / 4e-20 AT3G15810 229 / 1e-76 Protein of unknown function (DUF567) (.1) Potri.016G131850 [exp] 85 / 5e-20 AT5G01750 213 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016666 [exp] 101 / 5e-26 AT3G15810 265 / 5e-90 Protein of unknown function (DUF567) (.1) Lus10038097 [exp] 96 / 5e-24 AT3G15810 216 / 8e-71 Protein of unknown function (DUF567) (.1) Lus10007423 [exp] 94 / 3e-23 AT2G38640 187 / 4e-60 Protein of unknown function (DUF567) (.1) Lus10010681 [exp] 93 / 6e-23 AT2G38640 184 / 6e-59 Protein of unknown function (DUF567) (.1) Lus10032602 [exp] 87 / 1e-20 AT3G15810 211 / 5e-69 Protein of unknown function (DUF567) (.1) Lus10017526 [exp] 86 / 6e-20 AT5G41590 194 / 4e-62 Protein of unknown function (DUF567) (.1) Lus10001255 [exp] 84 / 1e-19 AT5G01750 218 / 5e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10002477 [exp] 84 / 1e-19 AT5G01750 218 / 5e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10028756 [exp] 85 / 2e-19 AT5G41590 194 / 7e-62 Protein of unknown function (DUF567) (.1) Lus10014154 [exp] 83 / 4e-19 AT5G01750 206 / 2e-67 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [poplar] [flax] Tubby_C PF04525 [poplar] [flax] LOR LURP-one-related
Representative CDS sequence Show only first row Show all	>Potri.006G113800.1 pacid=42767130 polypeptide=Potri.006G113800.1.p locus=Potri.006G113800 ID=Potri.006G113800.1.v4.1 annot-version=v4.1 ATGTCCAGGATTCATCCTTCTGATCAAAGTAGATGCCACGGCCATTCGTTGTTGAAAGATCACAACGACAGCAGGCGGCCACTTCATGATCATGATAAAC ATCATCCGTTATTACCACCTCCGTCTGTGCTCACTGTATGGAAGAGATCCAGCATGAGCTTCCAGGGTACAGACGGATTCACCGTTTTTGATCCGCACGG AACATTAGTTTTTAGAGTTGATAATTATTCCAGGAAGAATGGTTATGGTCTTGTCCTCATGGATGGAGTTGGCAATGCCTTGCTTTCCTTGAAACCCAAG ATGCTAAGCATGCAGTATCAGTGGAATGCTTACATAGGAGAAGATGGGTGCGAAAAGACCAGAGTATTCTCAATGAGGAGCCCATCAGTGCTCTTCCACT CTGCTGGCCACAAACATGCTGCAGAGATCTTCATGGGAGCACAATTAGGTCGTCACCATCAAAACACGCCAAATTTCAAGATTGAGGGATCGTTTAGATC GAGGGATTGCAAGATCGTCAAGGCTTCTACTGGGGAAGTAGTGGCAAAGATATTCAGGAAGAGAGTGAACAACACTACGATTTTACTGAGCGATGATGTG TTTAGCTTGGTGGTCCAACCTGGTTTCGATTCACACCTTATCATGGCCTTTGTAATTGTATTAGATCGCATCAGCAGCAAGCCTTTTTCTCCTGTTATGT GTTCTTAA
AA sequence Show only first row Show all	>Potri.006G113800.1 pacid=42767130 polypeptide=Potri.006G113800.1.p locus=Potri.006G113800 ID=Potri.006G113800.1.v4.1 annot-version=v4.1 MSRIHPSDQSRCHGHSLLKDHNDSRRPLHDHDKHHPLLPPPSVLTVWKRSSMSFQGTDGFTVFDPHGTLVFRVDNYSRKNGYGLVLMDGVGNALLSLKPK MLSMQYQWNAYIGEDGCEKTRVFSMRSPSVLFHSAGHKHAAEIFMGAQLGRHHQNTPNFKIEGSFRSRDCKIVKASTGEVVAKIFRKRVNNTTILLSDDV FSLVVQPGFDSHLIMAFVIVLDRISSKPFSPVMCS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80120			Protein of unknown function (D...		Potri.006G113800 [exp]	0	1
AT1G03010			Phototropic-responsive NPH3 fa...		Potri.002G209700 [exp]	1.00	0.8152
AT1G71970			unknown protein		Potri.013G111700 [exp]	4.89	0.7733
AT2G33640			DHHC-type zinc finger family p...		Potri.002G006900 [exp]	8.48	0.7643
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Potri.001G302600 [exp]	9.38	0.7619
AT2G45530			RING/U-box superfamily protein...		Potri.001G452800 [exp]	10.95	0.7213
AT3G44150			unknown protein		Potri.006G201600 [exp]	11.13	0.6903
AT5G02640			unknown protein		Potri.016G081600 [exp]	13.74	0.7438
AT5G19630			alpha/beta-Hydrolases superfam...		Potri.003G212400 [exp]	20.49	0.7594
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Potri.004G062400 [exp]	21.33	0.6848
AT5G54530			Protein of unknown function, D...		Potri.011G129900 [exp]	22.80	0.7423

Compare expression of checked genes

Potri.006G113800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.