Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38670 669 / 0 PECT1 phosphorylethanolamine cytidylyltransferase 1 (.1) AT2G32260 109 / 1e-26 ATCCT1 phosphorylcholine cytidylyltransferase (.1) AT4G15130 108 / 2e-26 ATCCT2 phosphorylcholine cytidylyltransferase2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G143600 [exp] 776 / 0 AT2G38670 682 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Potri.018G132700 [exp] 527 / 0 AT2G38670 510 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Potri.006G071000 [exp] 523 / 0 AT2G38670 521 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Potri.001G159400 [exp] 112 / 6e-28 AT2G32260 418 / 4e-148 phosphorylcholine cytidylyltransferase (.1) Potri.003G075000 [exp] 111 / 1e-27 AT2G32260 417 / 1e-147 phosphorylcholine cytidylyltransferase (.1) Potri.016G017500 [exp] 111 / 2e-27 AT2G32260 421 / 2e-148 phosphorylcholine cytidylyltransferase (.1) Potri.006G006700 [exp] 108 / 2e-26 AT2G32260 443 / 1e-157 phosphorylcholine cytidylyltransferase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027604 [exp] 519 / 0 AT2G38670 546 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Lus10022942 [exp] 508 / 4e-180 AT2G38670 539 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Lus10017147 [exp] 474 / 8e-167 AT2G38670 506 / 1e-179 phosphorylethanolamine cytidylyltransferase 1 (.1) Lus10021592 [exp] 473 / 2e-166 AT2G38670 505 / 4e-179 phosphorylethanolamine cytidylyltransferase 1 (.1) Lus10027337 [exp] 110 / 9e-27 AT2G32260 428 / 4e-151 phosphorylcholine cytidylyltransferase (.1) Lus10010471 [exp] 110 / 9e-27 AT2G32260 466 / 3e-166 phosphorylcholine cytidylyltransferase (.1) Lus10003808 [exp] 109 / 1e-26 AT2G32260 468 / 8e-167 phosphorylcholine cytidylyltransferase (.1) Lus10036229 [exp] 108 / 1e-26 AT2G32260 400 / 3e-141 phosphorylcholine cytidylyltransferase (.1) Lus10038368 [exp] 108 / 1e-26 AT2G32260 398 / 2e-140 phosphorylcholine cytidylyltransferase (.1) Lus10039039 [exp] 75 / 4e-15 AT2G32260 248 / 5e-82 phosphorylcholine cytidylyltransferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [poplar] [flax] HUP PF01467 [poplar] [flax] CTP_transf_like Cytidylyltransferase-like
Representative CDS sequence Show only first row Show all	>Potri.006G113900.1 pacid=42768895 polypeptide=Potri.006G113900.1.p locus=Potri.006G113900 ID=Potri.006G113900.1.v4.1 annot-version=v4.1 ATGGGTGGTGGTGGTGGTGATTCAGACATTGCACCGCATCCCGAGAAGATAAAGATTGTGGCCACATGCCTGGTGGTTTCCGTTGGCATATCCCTCTTAG GCTTCTATCTCAAGTCCGGCGCCGAATGGAGGTCTAATTGGTCATTATCTTTAAACAAGAAAAAGAAGAAGCCAATCCGAGTTTACATGGACGGATGTTT CGACATGATGCACTACGGCCACTGCAACGCCCTCCGCCAAGCACGCGCCCTTGGAGATCAATTGGTGGTCGGCGTTGTTAGCGACGCTGAAATCATAGCC AATAAAGGTCCTCCAGTGACACCTCTCCACGAGAGGATGATTATGGTAAATGCAGTGAAATGGGTGGATGAGGTGATTTCCGATGCGCCGTATGCTATCA CCGAAGAGTTCATGAAGAAGCTTTTTGATGAATATAATATTGATTATATTATTCACGGAGATGATCCTTGCGTTCTCCCTGACGGCACCGATGCTTATGC GCTCGCTAAGAAAGCTGGCCGTTACAAACAGATTAAGCGCACTGAAGGCGTCTCCAGCACTGATATCGTTGGTCGCATGCTTCTGTGTACCCGAGAGAGA TCGATTAGTGACAGTCACAATCATTCATCATTGCAGAGGCAGTTTAGCCATGGAAACAGCCAGAAATTTGAAGCAGGTGGATCCGGAACTGGAACTCGGG TTTCTCATTTCCTTCCTACTTCACGCAGAATTGTTCAATTCTCCAATGGCAAGGGGCCAGGGGACGATGCTCGCATAGTTTATATTGATGGTGCATTTGA TCTCTTCCATGCTGGACATGTCGAGATTCTCAGGCTTGCTCGAACGCTGGGAGATTTTCTACTTGTTGGAATACACAATGATCAGATCGTCAGTGCTAAA AGAGGAGCACACCGTCCTATTATGAATCTTCATGAAAGAAGCTTAAGTGTGTTGGCATGTCGATATGTGGATGAGGTGATTATAGGTGCTCCATGGGAAA TATCCAAAGACATGATCACAACCTTCAACATCTCATCAGTTGTTCATGGGACAGTTGCAGAGAACGATGACTTTCAGAAGGAACAAGACAATCCATACGC TGTGCCAATCAGTATGGGTATCTTCAAAGTTTTGGATAGCCCTTTGGATATTACAACTACCACGATAATTAGGAGGATTGTATCAAATCATGAAGCATAT CAGAAACGTAATCAGAAGAAGGCAGAAAGTGAGAAGAGATATTACGAGGATAAAACTTATGTCGCTGGTGATTGA
AA sequence Show only first row Show all	>Potri.006G113900.1 pacid=42768895 polypeptide=Potri.006G113900.1.p locus=Potri.006G113900 ID=Potri.006G113900.1.v4.1 annot-version=v4.1 MGGGGGDSDIAPHPEKIKIVATCLVVSVGISLLGFYLKSGAEWRSNWSLSLNKKKKKPIRVYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDAEIIA NKGPPVTPLHERMIMVNAVKWVDEVISDAPYAITEEFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYALAKKAGRYKQIKRTEGVSSTDIVGRMLLCTRER SISDSHNHSSLQRQFSHGNSQKFEAGGSGTGTRVSHFLPTSRRIVQFSNGKGPGDDARIVYIDGAFDLFHAGHVEILRLARTLGDFLLVGIHNDQIVSAK RGAHRPIMNLHERSLSVLACRYVDEVIIGAPWEISKDMITTFNISSVVHGTVAENDDFQKEQDNPYAVPISMGIFKVLDSPLDITTTTIIRRIVSNHEAY QKRNQKKAESEKRYYEDKTYVAGD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38670		PECT1	phosphorylethanolamine cytidyl...		Potri.006G113900 [exp]	0	1
AT4G16360			5'-AMP-activated protein kinas...		Potri.006G005800 [exp]	1.00	0.7873
AT2G01270		ATQSOX2	quiescin-sulfhydryl oxidase 2 ...		Potri.010G115700 [exp]	1.41	0.7734
AT3G19184	B3		AP2/B3-like transcriptional fa...		Potri.005G137600 [exp]	4.35	0.6117
AT4G01320		ATSTE24	Peptidase family M48 family pr...		Potri.014G088900 [exp]	6.24	0.6847	ATSTE24.1
AT5G18120		ATAPRL7	APR-like 7 (.1)		Potri.019G035700 [exp]	6.32	0.6693
AT4G39920		TFCC, POR	TUBULIN-FOLDING COFACTOR C, PO...		Potri.005G074700 [exp]	15.49	0.6708	POR.1,TFCFC
AT5G35080			unknown protein		Potri.006G061600 [exp]	17.74	0.6543
AT1G32790		CID11	CTC-interacting domain 11 (.1....		Potri.015G005400 [exp]	27.49	0.5786
AT3G51780		ATBAG4	BCL-2-associated athanogene 4 ...		Potri.016G121200 [exp]	27.92	0.6192
AT3G24315		ATSEC20	Sec20 family protein (.1)		Potri.010G064900 [exp]	30.39	0.6038

Compare expression of checked genes

Potri.006G113900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.