Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79620 1295 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G49760 846 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G49770 771 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G49780 679 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G06840 468 / 1e-149 Leucine-rich repeat protein kinase family protein (.1) AT3G53590 378 / 2e-117 Leucine-rich repeat protein kinase family protein (.1) AT5G65700 328 / 8e-97 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT5G49750 308 / 1e-94 Leucine-rich repeat (LRR) family protein (.1) AT3G49670 321 / 3e-94 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G37450 308 / 3e-90 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G144100 [exp] 1600 / 0 AT1G79620 1380 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G232400 [exp] 918 / 0 AT5G49760 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231700 [exp] 899 / 0 AT5G49760 1031 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G232500 [exp] 832 / 0 AT5G49760 873 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231850 [exp] 791 / 0 AT5G49760 914 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231500 [exp] 768 / 0 AT5G49760 800 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231600 [exp] 765 / 0 AT5G49760 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231300 [exp] 723 / 0 AT5G49760 719 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231200 [exp] 716 / 0 AT5G49760 759 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012159 [exp] 887 / 0 AT5G49760 1058 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10007587 [exp] 793 / 0 AT5G49760 956 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023849 [exp] 700 / 0 AT1G79620 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021003 [exp] 556 / 0 AT1G79620 549 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019114 [exp] 461 / 7e-147 AT1G06840 1288 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023848 [exp] 442 / 1e-146 AT1G79620 431 / 5e-143 Leucine-rich repeat protein kinase family protein (.1) Lus10034445 [exp] 449 / 5e-142 AT1G06840 1274 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035605 [exp] 434 / 4e-136 AT5G01950 1126 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10003244 [exp] 423 / 2e-132 AT5G01950 1039 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004061 [exp] 362 / 4e-110 AT5G01950 766 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.006G114400.1 pacid=42767663 polypeptide=Potri.006G114400.1.p locus=Potri.006G114400 ID=Potri.006G114400.1.v4.1 annot-version=v4.1 ATGGGACTGGGCGGAGCCACTGCCCGGTTACTCTTCTTCCTTTCTTTCTTTACTTCAGGAATTCATCTCCTTCTCTCCGACACAGACCCTCGTGATGCGG CAGCACTCAAATCACTCAAGAGTCAATGGCAAAATACACCACCTAGCTGGGACCAGTCTGATGATCCATGTGGAGCACCCTGGGAAGGAGTCACATGCTC CAATTCAAGGATCACTGCATTGGGGTTATCAACCATGAGCCTCGTAGGGAAGCTAAGTGGTGATATTGGAGGACTGGCCGAATTGAGATCCTTGGACCTG TCATTTAACTCAAACCTCACAGGACCCCTCTCTCCACGGTTAGGAGACCTGCTAAACTTGAACATCCTAATCCTTGCTGGTTGTGGCTTCAGCGGTAGTA TTCCAGATGAGCTGGGCAATCTCGCCAAGCTATCCTTCTTGGCTCTCAACTCAAACAAGTTCTCTGGCGGAATCCCACCTTCTCTGGGTAAACTCTCCAA ACTCTACTGGCTGGACCTTGCAGACAATCAATTGACAGGAACCATCCCAATCTCGAAAGGCACCATCCCAGGCTTGGACCTGCTACTAAATGCTAAGCAC TTTCATTTCAATAAAAACCAGCTTTCAGGTTCCCTTCCACCTGAACTTTTCAACTCTGATATGATGCTGATACACGTATTGTTCGATGGGAACCAACTTG AAGGAAATATTCCCTACACAATATGCCAAGTTCAGAGTCTTGAGGTTCTTCGACTTGACAGAAATTCTTTAGATGGGGAGGTCCCAGATAATTTGAACAA CCTCACGAACCTCAACGAATTGAATTTAGCACACAATAAGCTGAGAGGCCCTTTTCCAAATTTAACTAGAATGGATGCCCTCAATTATGTGGATCTTAGC AACAATTCTTTCGAATCTTCAGAAGCTCCTGATTGGTTCTTAACCTTACCATCTCTCACAACCTTAGTTATAGAGCAAGGATCTCTTCAAGGGACTTTTC CATCAGAAGTCTTCAGTTTTCCTCAGATACAGCAAGTGTTGTTGAGGAATAATGCATTCAATGGCTCCTTCAACATGAGTGTCAGCATCAGTCCACAACT CCAACTTGTTGATCTGCAGAACAACCAGATTTCCTCCGTAACACTGACGGCTGATTACACAAACAGATTAATACTTGTAGGAAACCCAGTGTGCATTGCT CTCTCAAATACCAGTTACTGTCAACTCCAGCAACAGTCTACAAAGCCTTATTCCACTAGCCTTGCAAATTGTGGAAGTAAACTGTGTCCCATTGAACAGA AGCTCAGCCCTCAGAGTTGTGAATGTGCCTATCCATATGAAGGGACTCTGTACTTCAGAGGACCCTCCTTCCGGGAATTGTCCAATGATAATACGTTTCA CTCACTAGAGATGTCACTTTGGGACCAGCTGGGCCTAACTCCTGGTTCAGTTTTTCTTCAGAACCCTTTTTTTAACGTCGACGACTACCTTCAGGTGCAG GTCGCGCTATTTCCACCCACTGGAAATTTTTTTAATAGATCTGAAATTCAGAGGATTGGATTTGCCTTGAGCAACCAAACGTACAAGCCTCCCAAATATT TTGGGCCCTACTATTTTATTGCATCGAATTACCCTTTTCCAGATGGTTCCAGAGGAAATTCTTTGAGCACTGGTGTGGTTGTTGGCATAGGAATTGGCTG TGGCTTACTGGTTATGAGCCTTGTCGGAGTAGGGATATATGCAATTCGTCAGAAGAAACGTGCAGAAAAAGCTATTGGATTAAGTAAACCATTTGCTTCT TGGGCTCCGAGCGGCAATGATAGTGGCGGGGCACCTCAGTTGAAGGGAGCAAGATGGTTCTCTTATGACGAACTTAAAAAGTGCACTTGCAACTTTTCGC AAAGTAATGAGATAGGTTCTGGAGGCTATGGAAAGGTGTATAGAGGAATGCTTTCTGATGGCCAAGTTGTGGCAATCAAAAGAGCTCAGAAGGGATCAAT GCAGGGAGGGCACGAGTTCAAGACTGAAATTGAGTTGCTATCACGGGTCCATCACAAGAACCTTGTTGGTCTTGTGGGTTTCTGTTTTGAACAAGGAGAA CAGATGCTAGTCTATGAATACATGCCTAATGGAACATTGCGGGAAAGCTTGTCAGGAAAGTCTGGCATTTATCTTGACTGGAAAAGGAGACTTCGCATTG CTCTTGGCTCGGCTAGAGGATTAACTTACTTGCACGAGCTTGCGGACCCTCCTATAATCCACAGAGACGTCAAGACCACCAACATTCTGTTGGATGAAAA CTTAACTGCAAAGGTTGCTGATTTTGGCCTGTCAAAGCTGGTATCAGACATCTCAAAAGGACATGTTTCAACTCAGGTTAAAGGCACCCTGGGTTATCTG GATCCAGAATATTACATGACACAACAATTAACGGAGAAGAGCGATGTGTACAGTTTTGGGGTGGTCATGCTTGAACTGATAATAGCAAAGCAGCCTATAG AGAAAGGGAAGTACATTGTCCGGGAAGTAAGAATGACAATGGACAGGGATGATGAAGAGCACCATGGATTGAAAGAAATAATGGATCCAGGTATTAGAAA CATGGGGAATCTTGTAGGATTTAGGAGGTTTTTGGAATTGGCAATGCAGTGTGTTGAAGAGTCAGCAGCAGAACGTCCACCAATGAGTGAGGTGGTGAAG GAAATAGAAATGATACTGAAAAATGATGGGATGAACACGAACTCAACTACATCAGCATCTTCTTCTGCTACAGACTTTGGAGCTTCAAGAGTTGGTCCTC TTAGGCATCCTTACAATGATGTTACAGCTAAGAATAAGGATGTTAACAGCGTCGACAGTGTCAATCACGATGCCTTTGATCACAGTGGTGGCTCCACCCT CTCAGGAAAAGCTGAGTCAACGTAG
AA sequence Show only first row Show all	>Potri.006G114400.1 pacid=42767663 polypeptide=Potri.006G114400.1.p locus=Potri.006G114400 ID=Potri.006G114400.1.v4.1 annot-version=v4.1 MGLGGATARLLFFLSFFTSGIHLLLSDTDPRDAAALKSLKSQWQNTPPSWDQSDDPCGAPWEGVTCSNSRITALGLSTMSLVGKLSGDIGGLAELRSLDL SFNSNLTGPLSPRLGDLLNLNILILAGCGFSGSIPDELGNLAKLSFLALNSNKFSGGIPPSLGKLSKLYWLDLADNQLTGTIPISKGTIPGLDLLLNAKH FHFNKNQLSGSLPPELFNSDMMLIHVLFDGNQLEGNIPYTICQVQSLEVLRLDRNSLDGEVPDNLNNLTNLNELNLAHNKLRGPFPNLTRMDALNYVDLS NNSFESSEAPDWFLTLPSLTTLVIEQGSLQGTFPSEVFSFPQIQQVLLRNNAFNGSFNMSVSISPQLQLVDLQNNQISSVTLTADYTNRLILVGNPVCIA LSNTSYCQLQQQSTKPYSTSLANCGSKLCPIEQKLSPQSCECAYPYEGTLYFRGPSFRELSNDNTFHSLEMSLWDQLGLTPGSVFLQNPFFNVDDYLQVQ VALFPPTGNFFNRSEIQRIGFALSNQTYKPPKYFGPYYFIASNYPFPDGSRGNSLSTGVVVGIGIGCGLLVMSLVGVGIYAIRQKKRAEKAIGLSKPFAS WAPSGNDSGGAPQLKGARWFSYDELKKCTCNFSQSNEIGSGGYGKVYRGMLSDGQVVAIKRAQKGSMQGGHEFKTEIELLSRVHHKNLVGLVGFCFEQGE QMLVYEYMPNGTLRESLSGKSGIYLDWKRRLRIALGSARGLTYLHELADPPIIHRDVKTTNILLDENLTAKVADFGLSKLVSDISKGHVSTQVKGTLGYL DPEYYMTQQLTEKSDVYSFGVVMLELIIAKQPIEKGKYIVREVRMTMDRDDEEHHGLKEIMDPGIRNMGNLVGFRRFLELAMQCVEESAAERPPMSEVVK EIEMILKNDGMNTNSTTSASSSATDFGASRVGPLRHPYNDVTAKNKDVNSVDSVNHDAFDHSGGSTLSGKAEST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79620			Leucine-rich repeat protein ki...		Potri.006G114400 [exp]	0	1
AT5G48740			Leucine-rich repeat protein ki...		Potri.002G242700 [exp]	1.41	0.9275
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Potri.010G197700 [exp]	1.73	0.9285
AT1G20670			DNA-binding bromodomain-contai...		Potri.016G141400 [exp]	2.00	0.9143
AT3G44820			Phototropic-responsive NPH3 fa...		Potri.009G150500 [exp]	2.23	0.9016
AT5G15900		TBL19	TRICHOME BIREFRINGENCE-LIKE 19...		Potri.017G110200 [exp]	3.00	0.9181
AT3G56930			DHHC-type zinc finger family p...		Potri.006G027400 [exp]	4.24	0.9001
AT2G02060	GARP		Homeodomain-like superfamily p...		Potri.011G006350 [exp]	6.08	0.8565
AT5G57670			Protein kinase superfamily pro...		Potri.006G173700 [exp]	7.87	0.8607
AT4G32880	HD	ATHB8, ATHB-8	homeobox gene 8 (.1)		Potri.006G237500 [exp]	8.12	0.8709	Pt-HB1.6
AT3G52870			IQ calmodulin-binding motif fa...		Potri.008G023866 [exp]	8.24	0.8594

Compare expression of checked genes

Potri.006G114400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.