Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03620 875 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT4G00230 676 / 0 XSP1 xylem serine peptidase 1 (.1) AT5G59090 557 / 0 ATSBT4.12 subtilase 4.12 (.1.2.3) AT5G59120 544 / 0 ATSBT4.13 subtilase 4.13 (.1) AT5G59190 528 / 3e-179 subtilase family protein (.1) AT5G58840 526 / 6e-178 Subtilase family protein (.1) AT3G46840 508 / 8e-171 Subtilase family protein (.1) AT5G59100 506 / 7e-170 Subtilisin-like serine endopeptidase family protein (.1) AT3G46850 503 / 8e-169 Subtilase family protein (.1) AT5G58830 501 / 3e-168 Subtilisin-like serine endopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G145600 [exp] 721 / 0 AT5G03620 615 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.002G151900 [exp] 657 / 0 AT4G00230 938 / 0.0 xylem serine peptidase 1 (.1) Potri.010G196800 [exp] 599 / 0 AT5G59100 599 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.012G133200 [exp] 580 / 0 AT5G59090 646 / 0.0 subtilase 4.12 (.1.2.3) Potri.010G196900 [exp] 563 / 0 AT5G59100 657 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196700 [exp] 555 / 0 AT5G59100 579 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.009G038001 [exp] 554 / 0 AT3G46850 794 / 0.0 Subtilase family protein (.1) Potri.014G074500 [exp] 530 / 0 AT4G00230 790 / 0.0 xylem serine peptidase 1 (.1) Potri.009G037900 [exp] 517 / 2e-174 AT5G59100 777 / 0.0 Subtilisin-like serine endopeptidase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003254 [exp] 756 / 0 AT5G03620 711 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10020582 [exp] 654 / 0 AT5G03620 654 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10020581 [exp] 644 / 0 AT5G03620 653 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10009313 [exp] 637 / 0 AT4G00230 924 / 0.0 xylem serine peptidase 1 (.1) Lus10004685 [exp] 632 / 0 AT4G00230 647 / 0.0 xylem serine peptidase 1 (.1) Lus10040253 [exp] 623 / 0 AT5G59090 640 / 0.0 subtilase 4.12 (.1.2.3) Lus10009868 [exp] 610 / 0 AT5G03620 605 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10009867 [exp] 591 / 0 AT5G59190 629 / 0.0 subtilase family protein (.1) Lus10004683 [exp] 557 / 0 AT5G59190 600 / 0.0 subtilase family protein (.1) Lus10002964 [exp] 552 / 0 AT5G59100 624 / 0.0 Subtilisin-like serine endopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family
Representative CDS sequence Show only first row Show all	>Potri.006G114500.1 pacid=42770270 polypeptide=Potri.006G114500.1.p locus=Potri.006G114500 ID=Potri.006G114500.1.v4.1 annot-version=v4.1 ATGAAGACAGTGACACAAAATCTCCTCGTGTTTGCGTTAGTAGCCACTGTAACTGCAGTTCACGCATCCAATGGCAGTGAACGGAAGCCGTACATTGTCT ACATGGGAGAAGCGCGTGGAGCGGGAATATCAACGTCAGACGAACACCACAGCCTGCTTTTGGCTGCTACCGGAGACGAATCTATTGCCAAGAATTCCAA AATATATAGCTACGGAAAGAACTTCAATGGTTTTGCTGCTAGGCTGTTGCCCCATGAAGTGAAGAGACTGTCAGATGAAGATAGTGTAGTGTCAGTGTTT GCAAATACTAGGAACAAACTTCACACAACAAGATCATGGGATTTTCTGGGAATGCCCCAAACAGCGAAGAGGAGACTTGATATAGAGAGCAATATCATAG TTGGTGTGCTGGATACTGGAATTTATGTCGATGCTCCCAGCTTCAACGATGAAGGTTACGGGCCTGTCCCAGCAAAATGGAAGGGAAAATGTGTCAAGGG AGCCAACTTCACGGGCTGCAACAACAAGGTTATTGGTGCAAGGTATTACAATCTTGAGAACTCTGAGGTAGAAAACCCAAGTCCAGCCGACCTAGACGGA CATGGCACCCACACTTCCTCAACCGCTGCTGGTATTGCTGTCAAGGATGCAAGCTTATATGGCATAGCACAAGGAACTGCACGTGGAGGTGTACCATCAG CCCGCATTGCCATGTACAAAGTGTGCTGGGGATCTGGTTGCAGTGACATGGATTTGCTAGCTGCATTTGACGATGCCATTTCTGATGGGGTCGACATAAT ATCAGTTTCAATAGGAGGGGCTTCTAGGAGTTTTTTCCAGGACCCGATTGCCATTGGATCATTCCATTCCATGAAGAAAGGTATATTGACCTCTTGTTCT GCAGGGAATAACGGGCCTTATCCAGGATCAGTTGAAAACGTTGCACCGTGGATCATGACAATTGCCGCTACTAGCATTGACAGGCAATTTACAACTGCAG TTAAGCTGGGCAATGGCATGAAAGCCACTGGAATTTCAATTAATACATTTTCACCAAAAAAGGAGACATACCCTCTTATCGATGGAGCCCGTGCATCCAA CAGTTCAGGAGATCACTACGGAAATATCAGTGCTTGCGATTATGGGACTCTAAGCATGGACAAAGTGAAAGGAAAACTGGTGTACTGCCTGGGGAGCAAC GGCCAGGATTACACTATAAAAGAGCTTCAAGGAGCTGGAGTGATCACGTCGCTTGATGCACCAACAGACACAGCCTATGCCACCGTAATACCTGGAACCA GCGTCCAGCTCAAGGATGGCTACAAGATTGATGTGTACATCAACTCCACCAGGAACCCTCGCGCTGTTATCTACAAGACGAGAACTACTTACATGAGTGC TCCCTCTGTAGCATCTTTCTCATCAAGAGGACCTCAGTTGATCAACCTCAACATCCTTAAGCCTGATATTGCAGCACCAGGGCTGGGTATATTAGCTGCC TACTCAAAACTGGCAACAGTGACAGGGGATCCAAATGACAGCCGATATTCCCCATTCAACATTATATCAGGAACATCAATGTCTTGCCCACATGCTGCAG CCGCCGCCGCCTATGTTAAGACCTTCCACCCCGACTGGTCACCTGCTGCGATCAAGTCTGCACTCATGACTACAGCCACGCCTATCAAGATTAAAGACGT AGATGCAGAGTTAGGATCTGGATCAGGGCAAATAAACCCATTGAAGGCGGTGCACCCTGGACTTGTCTATGACATTCCAATGAGTTCGTACATTAGATTC CTATGCAAGGAAGGCTACAACAGCACAACCATCAGTCTACTACTAGGTGGCAAGAAAAAGTACAGGTGCTCCAACTTCCAGCCTGCTCAAGGCACGGATG GCCTCAACTACCCTTCCATGCATGCCCAGCTCAAGAGTGCCGAATCCAACATTTCCGCTGTGTTCTACCGCACATTGACTAATGTAGGGTATGGCAATAA TTCACTTTATAAGGCGACTGTAACTTCACCAAAGGATCTATCAATCAAAATTGTACCAAACAGTTTGAAATTCAATCGGCCACACCAAAAGCAATCTTTC AAGGTTTTTGTGGAGGGTGGTTCCATGCAAAACGGGACTCGACTCCTATCAGCTCTACTCGAGTGGAGCGACTCAAAGCACATTGTTAGGAGCCCCATTA TTATCTACAATTCATCGCAATAG
AA sequence Show only first row Show all	>Potri.006G114500.1 pacid=42770270 polypeptide=Potri.006G114500.1.p locus=Potri.006G114500 ID=Potri.006G114500.1.v4.1 annot-version=v4.1 MKTVTQNLLVFALVATVTAVHASNGSERKPYIVYMGEARGAGISTSDEHHSLLLAATGDESIAKNSKIYSYGKNFNGFAARLLPHEVKRLSDEDSVVSVF ANTRNKLHTTRSWDFLGMPQTAKRRLDIESNIIVGVLDTGIYVDAPSFNDEGYGPVPAKWKGKCVKGANFTGCNNKVIGARYYNLENSEVENPSPADLDG HGTHTSSTAAGIAVKDASLYGIAQGTARGGVPSARIAMYKVCWGSGCSDMDLLAAFDDAISDGVDIISVSIGGASRSFFQDPIAIGSFHSMKKGILTSCS AGNNGPYPGSVENVAPWIMTIAATSIDRQFTTAVKLGNGMKATGISINTFSPKKETYPLIDGARASNSSGDHYGNISACDYGTLSMDKVKGKLVYCLGSN GQDYTIKELQGAGVITSLDAPTDTAYATVIPGTSVQLKDGYKIDVYINSTRNPRAVIYKTRTTYMSAPSVASFSSRGPQLINLNILKPDIAAPGLGILAA YSKLATVTGDPNDSRYSPFNIISGTSMSCPHAAAAAAYVKTFHPDWSPAAIKSALMTTATPIKIKDVDAELGSGSGQINPLKAVHPGLVYDIPMSSYIRF LCKEGYNSTTISLLLGGKKKYRCSNFQPAQGTDGLNYPSMHAQLKSAESNISAVFYRTLTNVGYGNNSLYKATVTSPKDLSIKIVPNSLKFNRPHQKQSF KVFVEGGSMQNGTRLLSALLEWSDSKHIVRSPIIIYNSSQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03620			Subtilisin-like serine endopep...		Potri.006G114500 [exp]	0	1
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Potri.017G037900 [exp]	2.64	0.8499
AT4G23980	ARF	ARF9	auxin response factor 9 (.1.2)		Potri.014G100100 [exp]	3.87	0.7717
AT5G45470			Protein of unknown function (D...		Potri.015G113400 [exp]	5.65	0.8364
AT1G05460		SDE3	SILENCING DEFECTIVE, P-loop co...		Potri.005G047500 [exp]	6.63	0.7969
AT1G07400			HSP20-like chaperones superfam...		Potri.015G064800 [exp]	7.14	0.7705
					Potri.005G146450 [exp]	9.00	0.8024
AT5G45480			Protein of unknown function (D...		Potri.015G113700 [exp]	12.32	0.8302
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Potri.003G197200 [exp]	14.83	0.7609
AT4G30520		SARK	SENESCENCE-ASSOCIATED RECEPTOR...		Potri.018G101300 [exp]	17.32	0.7982
AT4G03140			NAD(P)-binding Rossmann-fold s...		Potri.014G135510 [exp]	20.83	0.7767

Compare expression of checked genes

Potri.006G114500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.