Plant FIBer expression Database

Potri.006G114600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G19490 171 / 8e-48 bZIP Basic-leucine zipper (bZIP) transcription factor family protein (.1)
AT1G32150 42 / 0.0007 bZIP AtbZIP68 basic region/leucine zipper transcription factor 68 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003255
[exp]
228 / 8e-68 AT1G19490 194 / 2e-55 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Lus10035597
[exp]
213 / 2e-63 AT1G19490 188 / 4e-54 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Lus10037750
[exp]
42 / 0.0002 AT5G49450 85 / 1e-21 basic leucine-zipper 1 (.1)
Lus10016884
[exp]
40 / 0.0007 AT5G49450 80 / 8e-20 basic leucine-zipper 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0018 bZIP PF00170 bZIP_1 bZIP transcription factor
Representative CDS sequence
>Potri.006G114600.1 pacid=42769986 polypeptide=Potri.006G114600.1.p locus=Potri.006G114600 ID=Potri.006G114600.1.v4.1 annot-version=v4.1
ATGGATTTGGATTTAGAGAGATGTTCGGTTTCGAGTTCGGGTTCTTCGTCGGCCGCGGATCGGATGGAGCTCGAGGCGGCGGAGGCTTTGGCTGATTTGG
CACATTTAGCGATGCGAGAGAGCAGCGGCAGTGAATGGGGAAGCAAAGGCAAACGAGCTAGGAAGCGAGTCAGGGCTGAGTCTGACTCGGTCTCCACTTA
TTCCGATCTCCCCCGGCAGGATCGAGCAGTTGTGGATCAGCAGCCAATACATAGCAATGTAGTGAAGCCTGCAAGACAAGAGCTGGATGCAGATGTGCCA
AAATCAAGTCCTAGTTGTGCAACAAGTTACCCATCGTATGGCACTGGCAGGTCAAGGCTAAATTTAACCGAGGCTGAAAAGGAAGAACGAAGACTGCGTA
GAATATTGGCAAACAGAGAGTCCGCTCGACAGACTATTCGCCGTAGACAGGCTCTGTGCGAGGAGTTAACTAGAAAAGCTGCTGATCTGTCATGGGAGAA
TGAAAACTTAAAGAAGGAAAAAGAGCTGGCCTTGAAAAACTATCAGTCTTTAGAGACCACAAATAAACACTTAAAGGCACAGATGGCTAAGCAAATAAAA
GCTGAGATGGAGGTATCTCCTGGAGACCTCAAGTCAGCCCTTGTTGACATACCTACTACTGCACCAACAAACTGCCCATTGCTTGTATATAACCAACATG
CATTTTCACCTCATTGCTGGCCTTCTATTATTCAATCATCAAATCCTATCCAATCACATTATACAACTGAAAATGCCATTGTAATTCCGTCAAACATGCC
CATGCCAACTAATGGAACACATGATTCATCACAGCTGCAACAAGAAAACACTGTAATTGTCAGTGGCCCAAGGACACCCTTATATGTAGTTTCCTGTCCA
TGGTTCTTTCCAGGTCCTGATCATGGGAATGGACTCCATGCTCAGCCTTCTTTTAGCTTTAAACACAGACAAGATGGGATTTCGTTGAATAATCTATGTT
GTGGTAGTTCATCTCCAAAAGCTGCTGCACCTATGGAGAACCGGCATTCCTCTTTATCCATTATAGTTAAATCAGAAACTACTAGCTCAGAAGAAGTCAG
GGTTATCAATGATCTCAATGAGACGCCAGTAGGATTTACCCTGTATGGAGGTGGTCAGTGCGAAGGAACTCACCCTAAAGAAATGATTCTTACTCCTGTA
CCTCCAACTTCTGTTACGCCAGCAGTAGCTGTTAAAAATGAGGCTGGGCAAAAGTCAGAGCATGCTTTCGGTGCTAATGGTATTTGCACAAAAGCTAGTC
AACTAAGGTGTGTTTTACCAGAAAAGAATCAAGACCCATTTAAATTCCCGAGCAAGAAGCTAGTGGATGCAGCTTCTGCAGCAGAGGCAAGGAGGAGGAG
AAAGGAACTTACAAAACTAAAAAACCTCCATGGCCGCCAATGTCGATTGAATTGTTGA
AA sequence
>Potri.006G114600.1 pacid=42769986 polypeptide=Potri.006G114600.1.p locus=Potri.006G114600 ID=Potri.006G114600.1.v4.1 annot-version=v4.1
MDLDLERCSVSSSGSSSAADRMELEAAEALADLAHLAMRESSGSEWGSKGKRARKRVRAESDSVSTYSDLPRQDRAVVDQQPIHSNVVKPARQELDADVP
KSSPSCATSYPSYGTGRSRLNLTEAEKEERRLRRILANRESARQTIRRRQALCEELTRKAADLSWENENLKKEKELALKNYQSLETTNKHLKAQMAKQIK
AEMEVSPGDLKSALVDIPTTAPTNCPLLVYNQHAFSPHCWPSIIQSSNPIQSHYTTENAIVIPSNMPMPTNGTHDSSQLQQENTVIVSGPRTPLYVVSCP
WFFPGPDHGNGLHAQPSFSFKHRQDGISLNNLCCGSSSPKAAAPMENRHSSLSIIVKSETTSSEEVRVINDLNETPVGFTLYGGGQCEGTHPKEMILTPV
PPTSVTPAVAVKNEAGQKSEHAFGANGICTKASQLRCVLPEKNQDPFKFPSKKLVDAASAAEARRRRKELTKLKNLHGRQCRLNC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G19490 bZIP Basic-leucine zipper (bZIP) tr... Potri.006G114600
[exp]
0 1
AT3G24440 VRN5, VIL1 VERNALIZATION 5, VIN3-LIKE 1, ... Potri.018G076500
[exp]
2.00 0.8044
AT1G12460 Leucine-rich repeat protein ki... Potri.003G117500
[exp]
5.65 0.7627
AT3G51550 FER FERONIA, Malectin/receptor-lik... Potri.006G110000
[exp]
9.00 0.7376
AT3G14470 NB-ARC domain-containing disea... Potri.003G200200
[exp]
10.90 0.7453
AT5G16110 unknown protein Potri.004G099800
[exp]
10.95 0.6892
AT1G29470 S-adenosyl-L-methionine-depend... Potri.005G184500
[exp]
10.95 0.7063
AT1G10020 Protein of unknown function (D... Potri.009G084000
[exp]
12.32 0.6946
AT4G39900 unknown protein Potri.008G145000
[exp]
14.49 0.6666
AT4G07960 ATCSLC12 CELLULOSE-SYNTHASE LIKE C12, C... Potri.002G114200
[exp]
16.27 0.7594 Pt-ATCSLC12.1
AT1G45688 unknown protein Potri.002G124600
[exp]
16.79 0.7480

Potri.006G114600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.