Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	MDHAR1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52880 709 / 0 ATMDAR1 monodehydroascorbate reductase 1 (.1.2) AT5G03630 674 / 0 ATMDAR2 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) AT3G09940 597 / 0 MDAR2, ATMDAR3, MDHAR MONODEHYDROASCORBATE REDUCTASE 2, ARABIDOPSIS THALIANA MONODEHYDROASCORBATE REDUCTASE 3, monodehydroascorbate reductase (.1.2) AT3G27820 465 / 9e-162 ATMDAR4 monodehydroascorbate reductase 4 (.1) AT1G63940 367 / 1e-123 MDAR6 monodehydroascorbate reductase 6 (.1.2.3.4) AT3G17240 55 / 5e-08 mtLPD2, LPD2 lipoamide dehydrogenase 2 (.1.2.3) AT4G28220 54 / 1e-07 NDB1 NAD(P)H dehydrogenase B1 (.1) AT1G48030 50 / 2e-06 mtLPD1 mitochondrial lipoamide dehydrogenase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G346200 [exp] 473 / 6e-165 AT3G27820 723 / 0.0 monodehydroascorbate reductase 4 (.1) Potri.001G099600 [exp] 359 / 6e-120 AT1G63940 793 / 0.0 monodehydroascorbate reductase 6 (.1.2.3.4) Potri.008G100800 [exp] 62 / 5e-10 AT3G17240 868 / 0.0 lipoamide dehydrogenase 2 (.1.2.3) Potri.010G151400 [exp] 56 / 4e-08 AT3G17240 817 / 0.0 lipoamide dehydrogenase 2 (.1.2.3) Potri.003G178200 [exp] 43 / 0.0003 AT3G24170 848 / 0.0 glutathione-disulfide reductase (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035593 [exp] 729 / 0 AT3G52880 668 / 0.0 monodehydroascorbate reductase 1 (.1.2) Lus10008633 [exp] 519 / 0 AT3G52880 493 / 3e-174 monodehydroascorbate reductase 1 (.1.2) Lus10022260 [exp] 471 / 4e-164 AT3G27820 719 / 0.0 monodehydroascorbate reductase 4 (.1) Lus10013079 [exp] 447 / 6e-154 AT3G27820 694 / 0.0 monodehydroascorbate reductase 4 (.1) Lus10028763 [exp] 346 / 1e-114 AT1G63940 755 / 0.0 monodehydroascorbate reductase 6 (.1.2.3.4) Lus10037825 [exp] 54 / 1e-07 AT1G48030 922 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10017102 [exp] 54 / 1e-07 AT1G48030 918 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10043103 [exp] 53 / 4e-07 AT1G48030 889 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10032649 [exp] 50 / 3e-06 AT1G48030 892 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10018541 [exp] 49 / 5e-06 AT4G28220 819 / 0.0 NAD(P)H dehydrogenase B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00070 [poplar] [flax] Pyr_redox Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Potri.006G114800.2 pacid=42770673 polypeptide=Potri.006G114800.2.p locus=Potri.006G114800 ID=Potri.006G114800.2.v4.1 annot-version=v4.1 ATGGCGGAGAAGAGCTTCAAGTATGTGATCATCGGCGGTGGTGTATCTGCTGGATACGCTGCTAGAGAGTTTTGCAAGCAGGGGGTTAAGCCCGGTGAGC TTGCAATCATCTCCAAGGAGGCGGTGGCTCCTTATGAACGTCCTGCACTGAGCAAGGCTTATCTTTTTCCTGAGGGAACTGCAAGACTTCCAGGATTCCA TGTCTGTGTTGGAAGTGGAGGGGAGAGATTACTTCCTGAGTGGTACAAAGAGAAAGGGATTGAGTTGATCCTTAGCACAGAAATAGTGAAAGCAGATCTT GCTGCCAAGACACTTGTTAGTGCAGCTGGAGAAATATTCAAGTATCATATTTTGATTATTGCAACTGGTTCCACAGTCATTAAGTTGACAGATTTTGGTG TCCAAGGAGCTGATGCCAAAAACATTCTCTACTTGAGAGAAATTGATGATGCTGACAAACTTGTAGAAGCAATTAAAGGAAAGAAGAATGGAAAGGCTGT AATTGTTGGAGGAGGATACATTGGTCTTGAACTTAGTGCAGCTTTAAGAATCAACAATATTGATGTTACAATGGTTTATCCCGAACCATGGTGCATGCCT CGCCTTTTTACTGCTGGTATAGCTGCCTTCTATGAGGGTTATTATGCTAACAAAGGAGTCAAGATCGTTAAGGGAACAGTTGCTGTTGGGTTCAATGCTG ATTCAAATGGAGAGGTAAAGGAAGTGAAACTAAAGGATGGCAGGGTGCTAGAAGCTGACATTGTTGTTGTTGGTGTTGGTGGAAGGCCTCTTACAACACT ATTTAAAGGGCAGGTTGAAGAGGAGAAAGGTGGAATAAAGACTGATGCGTTTTTCAAAACTAGTATTTCTGATGTATATGCTGTCGGTGATGTCGCCACA TTTCCTTTGAAGTTGTACAATGATATCAGAAGAGTTGAACATGTTGACCATGCCCGTAAATCAGCTGAGCAGGCTGTGAAGGCCATCAAGTCAAATGAAG AGGGGAAAACAATTGATGTATATGATTACCTTCCATTCTTCTATTCTCGTTCCTTTGATCTGTCCTGGCAATTCTACGGTGACAATGTTGGTGATGCCGT GCTATTTGGAGACAATGATCCAGCATCACCCAAGCCAAAGTTTGGATCATACTGGATCAAAGATGGGAAGGTTGTCGGAGTTTTTCTGGAGGGTGGAACT CCCGATGAGAATAAAGCAATTGCCAAGGTTGCTAGGGTCCAGCCTCCTGTTGAGAATTTGGACGTGCTGACAAAAGAAGGTCTTTCTTTCGCCTGTAAGA TATGA
AA sequence Show only first row Show all	>Potri.006G114800.2 pacid=42770673 polypeptide=Potri.006G114800.2.p locus=Potri.006G114800 ID=Potri.006G114800.2.v4.1 annot-version=v4.1 MAEKSFKYVIIGGGVSAGYAAREFCKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVKADL AAKTLVSAAGEIFKYHILIIATGSTVIKLTDFGVQGADAKNILYLREIDDADKLVEAIKGKKNGKAVIVGGGYIGLELSAALRINNIDVTMVYPEPWCMP RLFTAGIAAFYEGYYANKGVKIVKGTVAVGFNADSNGEVKEVKLKDGRVLEADIVVVGVGGRPLTTLFKGQVEEEKGGIKTDAFFKTSISDVYAVGDVAT FPLKLYNDIRRVEHVDHARKSAEQAVKAIKSNEEGKTIDVYDYLPFFYSRSFDLSWQFYGDNVGDAVLFGDNDPASPKPKFGSYWIKDGKVVGVFLEGGT PDENKAIAKVARVQPPVENLDVLTKEGLSFACKI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G52880		ATMDAR1	monodehydroascorbate reductase...		Potri.006G114800 [exp]	0	1	MDHAR1.1
AT1G11200			Protein of unknown function (D...		Potri.004G035900 [exp]	2.00	0.6824
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Potri.002G166700 [exp]	3.46	0.6601	ATPOB1.2
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Potri.006G100900 [exp]	17.74	0.6230
AT3G05530		ATS6A.2, RPT5A	regulatory particle triple-A A...		Potri.013G016800 [exp]	27.82	0.6522	RPT5.2
AT4G23630		RTNLB1, BTI1	Reticulan like protein B1, VIR...		Potri.001G097700 [exp]	27.92	0.6621
AT5G66930			unknown protein		Potri.007G037800 [exp]	28.49	0.6256
AT1G06210			ENTH/VHS/GAT family protein (....		Potri.002G038000 [exp]	43.12	0.6183
AT1G02816			Protein of unknown function, D...		Potri.002G203400 [exp]	46.47	0.6221
AT1G67350			unknown protein		Potri.001G055400 [exp]	59.80	0.5892
AT2G35680			Phosphotyrosine protein phosph...		Potri.003G080000 [exp]	63.44	0.5511

Compare expression of checked genes

Potri.006G114800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.