Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66950 2148 / 0 ABCG39, PDR11, ATPDR11 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) AT2G36380 2145 / 0 ABCG34, PDR6, ATPDR6 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) AT1G15520 1763 / 0 ATABCG40, ABCG40, PDR12, ATPDR12 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) AT3G16340 1689 / 0 ABCG29, ATPDR1, PDR1, AtABCG29 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2) AT1G59870 1675 / 0 ATABCG36, ABCG36, PEN3, PDR8, ATPDR8 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) AT1G15210 1653 / 0 ABCG35, PDR7, ATPDR7 ATP-binding cassette G35, pleiotropic drug resistance 7 (.1) AT2G26910 1561 / 0 PEC1, ABCG32, PDR4, ATPDR4 PERMEABLE CUTICLE 1, ATP-binding cassette G32, pleiotropic drug resistance 4 (.1) AT2G29940 1514 / 0 ABCG31, PDR3, ATPDR3 ATP-binding cassette G31, pleiotropic drug resistance 3 (.1) AT3G53480 1455 / 0 PIS1, ABCG37, PDR9, ATPDR9 polar auxin transport inhibitor sensitive 1, ATP-binding cassette G37, pleiotropic drug resistance 9 (.1) AT2G37280 1435 / 0 ABCG33, PDR5, ATPDR5 ATP-binding cassette G33, pleiotropic drug resistance 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G024400 [exp] 2204 / 0 AT1G66950 2011 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Potri.009G147100 [exp] 1890 / 0 AT2G36380 1759 / 0.0 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) Potri.001G048800 [exp] 1827 / 0 AT1G15520 2034 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048700 [exp] 1822 / 0 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048900 [exp] 1809 / 0 AT1G15520 2055 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G179000 [exp] 1806 / 0 AT1G15520 2010 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G175700 [exp] 1806 / 0 AT1G15520 2058 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G178900 [exp] 1790 / 0 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G183200 [exp] 1775 / 0 AT1G15520 2031 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008984 [exp] 1979 / 0 AT2G36380 2007 / 0.0 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) Lus10041668 [exp] 1776 / 0 AT1G15520 2128 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10014384 [exp] 1759 / 0 AT1G66950 1917 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Lus10006277 [exp] 1754 / 0 AT1G66950 1791 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Lus10024061 [exp] 1751 / 0 AT1G15520 2139 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024060 [exp] 1745 / 0 AT1G15520 2115 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10008090 [exp] 1714 / 0 AT1G15520 2045 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10020568 [exp] 1701 / 0 AT1G66950 1761 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Lus10025824 [exp] 1696 / 0 AT1G59870 2220 / 0.0 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) Lus10014150 [exp] 1687 / 0 AT3G16340 2221 / 0.0 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0181 [poplar] [flax] ABC-2 PF01061 [poplar] [flax] ABC2_membrane ABC-2 type transporter CL0181 [poplar] [flax] PF08370 [poplar] [flax] PDR_assoc Plant PDR ABC transporter associated
Representative CDS sequence Show only first row Show all	>Potri.006G115000.1 pacid=42770175 polypeptide=Potri.006G115000.1.p locus=Potri.006G115000 ID=Potri.006G115000.1.v4.1 annot-version=v4.1 ATGGCGGCAGTTTTAGCCGGAGATGATCTGGCAAGATCAATGAGCAGCAGCAGCAGGAGGAGCTTTAGTTACAGGAGCTGGGCGTCTGCTAGCATAAGAG AAGCATGGACTGCACCGGTGGACGTTTTCAGCCAGAATAGCGGGAGGAGGCAGCAGCAGATGGACGACGAGGAGGAGCTGCGATGGGCAGCTATCGAGAG ATTGCCGACTTATGATCGGATGAGGAAAGGGGTTCTAAGGCAGGTACTTGATAATGGAAGAATGGTTCAAAGTGAGGTTGATGTAACAAGGCTTGGAATG CAAGATAAGAAGCAGTTGATGGAGAACATACTTAGAGTTGTTGAAGAAGACAATGAAAAGTTTCTGAGGAGAGTTAGAGACAGGACTGATAGGGTGGGGA TTGAGATTCCAAAGATTGAAGTTCGATTTCAGCACTTATCAGTGGAGGGTGAAGTTTTTGTTGGGAGCAGAGCACTTCCTACCTTACTTAATGCCACGCT GAATGCAGTAGAGAGTATTCTTGGATTGGTTGGGCTTGCTCCATCAAAGAAGAGAACAGTTCAGATTCTTCAAGATATCAGTGGAATTGTCAAACCATCA CGGATGGCCCTACTTCTGGGTCCTCCAAGCTCGGGGAAAACAACAATGCTAATGGCACTTGCAGGCAAACTCCACCGGGAGCTAAGATCATCCGGGAAGA TCACCTATTGTGGGCATGAATTGAAAGAGTTTGTTCCTCAGAGGAGTTGTGCTTACATTAGTCAGCATGATCTTCATTATGGAGAAATGACAGTCAGAGA GACATTGGATTTTTCTGGACGCTGCTTAGGTGTGGGCACGAGGTATGAACTGCTGGCGGAACTCTCTAGGCGTGAGAAAGAAGCAGGAATTAAGCCAGAT CCAGAAATTGACGCGTTCATGAAAGCCACAGCAATGTCAGGACAGGAACATAGTTTGGTCACTGATTATACTCTCAAGATACTCGGATTGGATATTTGTG CTGATATTTTGGTTGGGAATGACATGAAAAGGGGTATTTCTGGAGGGCAGAAGAAGCGTGTGACTACCGGAGAGATGTTGGTGGGACCAGCAAAGGTTCT TTTAATGGATGAAATATCTACAGGGTTGGACAGTGCCACTACTTTCCAGATTTGCAAGTTCATGAGGCAAATGGTCCATACCATGGATGTAACTATGATA GTTTCTCTCCTACAGCCAGCACCAGAGACATTTGAGCTTTTTGATGACATTATCCTGCTTTCAGAGGGTCAGGTTGTCTATCAAGGTCCACGCGAGCATG TCCTTGAATTCTTTGAACACATGGGTTTCAGATGCCCTGATAGGAAAGGAGCTGCTGACTTTTTGCAAGAAGTAACTTCCAAGAAGGACCAGGAACAATA TTGGTTCAGAAAGAATATACCTTACAGATTTATTTCAGTTCTTGAGTTTGTGCGAGGTTTCAACTCTTTTCATGTCGGCCAACAACTTGCTTCAGATCTT AGGACTCCTTATGATAAATCAAGGGCCCATCCGGCTGCATTGGTCACAGAGAAGTATGGCATCTCAAATTGGGAGCTGTTCAGGGCATGTTTCTCAAGAG AGTGGCTGCTGATGAAGCGGAACTCTTTTTTGTATATATTCAAAACAACCCAGATAACAATCATGTCAATAATTGCCTTCACAGTGTTTTTTCGGACAGA AATGAAAGTGGGGACTGTACTAGGTGGACAAAAATTTTTTGGAGCATTGTTTTTCAGTCTAGTCAATGTGATGTTTAATGGGATGGCAGAACTTTCAATG ACAGTTTTCAGGCTCCCTGTCTTCTATAAACAGAGGGATTTCTTGTTCTTTCCTGCGTGGGCTTTCGGCTTACCAATATGGGTACTCAGGATTCCATTAT CGTTAATGGAATCAGCGATATGGATTATCCTAACATATTACACAATTGGTTTCGCTCCTTCTGCTAGCAGGTTCTTCAGACAGTTCCTTGCATTTTTTTG CATACATCAGATGGCTCTGGCCCTCTTTCGTTTCATTGCTGCTGTTGGAAGAACACAAGTCGTTGCAAACACACTAGGGACCTTCACCTTGCTTTTGGTT TTCGTGCTCGGAGGATTCATTGTTGCCAAAGACGACATTGAGCCATGGATGATCTGGGGCTACTATTCCTCTCCTATGATGTATGGACAGAATGCCATTG TCATGAATGAATTCCTTGACGAAAGATGGAGTGTGAATAATACGGACTCTAATTTCGCTGGAGAAACTGTTGGGAAAGTGCTTCTGAAGGCTAGAGGCTT CTTTACTGATGATTATTGGTTTTGGATTTGTATCGGAGCACTCTTTGGGTTTTCGCTTTTATTCAACGTTTTATTTATTGTAGCATTGACTTTCTTGAAC CCTTTGGGTGACTCAAAAGCTGTCGTTGTGGATGACGATGCGAAGAAGAATAAGAAGACATCATCTGGACAACAGAGAGCAGAAGGTATTCCTATGGCAA CGAGAAATTCTACAGAAATTGGTGGCGCAGTGGATAATTCAACAAAAAGAGGAATGGTTCTGCCATTCCAGCCCCTTTCACTTGCATTCAACCATGTGAG CTACTATGTGGATATGCCTGATGAAATGAAGAGTCAAGGAATTGATGAAGAGCGTCTTCAACTGCTCAGAGATGTTAGTGGTGCTTTTAGACCAGGGATA TTGACTGCACTTGTGGGCGTAAGTGGTGCTGGGAAGACCACCTTGATGGATGTGTTAGCTGGAAGGAAGACCGGTGGTTACATTGAAGGAAGTATTAACA TCTCAGGCTATCCAAAGAATCAAGAGACATTTGCTCGTGTGAGCGGTTATTGTGAACAGAATGACATTCATTCACCTCGTGTTACTGTTTATGAGTCTCT TCTGTACTCAGCCTGGCTCCGTCTTTCTAAAGATATAGATACAAAAACCCGAAAGATGTTTGTTGAAGAAGTTATGGAATTGGTTGAGCTAAATCCCCTC AGAGATGCCTTAGTTGGACTTCCAGGTTTAGACGGCCTATCAACAGAACAAAGGAAAAGATTGACCATAGCAGTAGAATTGGTAGCTAATCCCTCTATCA TATTCATGGATGAGCCAACTTCTGGTCTTGATGCTAGAGCTGCTGCTATCGTGATGCGTACTGTCAGAAACACTGTGGACACAGGTAGAACTGTTGTGTG CACCATTCATCAGCCTAGCATAGACATTTTTGAAGCTTTTGATGAGCTGTTGTTGATGAAAAGAGGAGGTCAAGTCATTTATGCCGGATCTCTTGGTCAC CGTTCTCACAAGCTCATAGAATATTTTGAGGCTGTCCCAGGTGTTCCCAAGATAAGAGATGCGTATAACCCTGCAACATGGATGCTCGAAATTAGTGCTC CTTCAATGGAGGCACAACTGGATGTAGACTTCGCAGAACAATATGCCAACTCCTCCCTCTATCAGAGGAATCAGGAAATTATCAAAGAGCTAAGCACACC AGCACCAGGATCCAAGGATCTCTACTTCCGAACCCAATACTCCCAAACTTTTCTTACTCAATGCAAAGCTTGTTTCTGGAAACAGCATTGGTCTTACTGG AGAAACCCTCGTTATAATGCCATTCGTCTGTTCATGACATTAGCCATTGGAATAATATTCGGTCTCATCTTTTGGGACAAAGGACAGAAGACATTTAGCC AGCAAGATCTATTGAATGTTTTCGGAGCCATGTACGCAGCGGTGCTTTTCCTTGGTGCAACCAATGCTGCGGGAGTGCAGTCTATAATTGCTATTGAGAG AACAGTTTTCTATCGCGAAAGAGCAGCTGGAATGTACTCCCCATTGCCTTACGCATTTGCGCAGGTGGCCATAGAAGCAATTTATGTAGCAGTACAAACT ATTGTTTATAGCATTCTCCTTTTCTCCATGATGGGCTTCGAGTGGACGGCTGCAAAGTTCTTGTGGTTCTACTACTTCATATTCATGTGCTTTGTTTACT TCACATTGTTTGGGATGATGGTTGTTGCATTGACCCCTGCCCCACAAATTGCTGCCATTTGCATGTCCTTCTTCACGTCCTTCTGGAACTTGTTCTCTGG TTTCCTTCTTCCTAGGCCTCAAATACCTATTTGGTGGAGGTGGTACTACTGGTGTTCTCCAGTGGCTTGGACATTATACGGCCTCGTGACATCTCAAGTG GGTGATAAAACCAATACAATCAGCGTACCTGGCGAGTCTGAAGATGTGCCAATAAAGGAATTCCTCAAAGGATACTTGGGATTTGAATATGACTTTCTTC CTGCCGTGGCCGCCGCCCATCTTGGATGGGTTGTCCTCTTCTTCTTTCTGTTTTCCTATGGTATCAAGTTCCTCAACTTCCAGAAGAGATAA
AA sequence Show only first row Show all	>Potri.006G115000.1 pacid=42770175 polypeptide=Potri.006G115000.1.p locus=Potri.006G115000 ID=Potri.006G115000.1.v4.1 annot-version=v4.1 MAAVLAGDDLARSMSSSSRRSFSYRSWASASIREAWTAPVDVFSQNSGRRQQQMDDEEELRWAAIERLPTYDRMRKGVLRQVLDNGRMVQSEVDVTRLGM QDKKQLMENILRVVEEDNEKFLRRVRDRTDRVGIEIPKIEVRFQHLSVEGEVFVGSRALPTLLNATLNAVESILGLVGLAPSKKRTVQILQDISGIVKPS RMALLLGPPSSGKTTMLMALAGKLHRELRSSGKITYCGHELKEFVPQRSCAYISQHDLHYGEMTVRETLDFSGRCLGVGTRYELLAELSRREKEAGIKPD PEIDAFMKATAMSGQEHSLVTDYTLKILGLDICADILVGNDMKRGISGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSATTFQICKFMRQMVHTMDVTMI VSLLQPAPETFELFDDIILLSEGQVVYQGPREHVLEFFEHMGFRCPDRKGAADFLQEVTSKKDQEQYWFRKNIPYRFISVLEFVRGFNSFHVGQQLASDL RTPYDKSRAHPAALVTEKYGISNWELFRACFSREWLLMKRNSFLYIFKTTQITIMSIIAFTVFFRTEMKVGTVLGGQKFFGALFFSLVNVMFNGMAELSM TVFRLPVFYKQRDFLFFPAWAFGLPIWVLRIPLSLMESAIWIILTYYTIGFAPSASRFFRQFLAFFCIHQMALALFRFIAAVGRTQVVANTLGTFTLLLV FVLGGFIVAKDDIEPWMIWGYYSSPMMYGQNAIVMNEFLDERWSVNNTDSNFAGETVGKVLLKARGFFTDDYWFWICIGALFGFSLLFNVLFIVALTFLN PLGDSKAVVVDDDAKKNKKTSSGQQRAEGIPMATRNSTEIGGAVDNSTKRGMVLPFQPLSLAFNHVSYYVDMPDEMKSQGIDEERLQLLRDVSGAFRPGI LTALVGVSGAGKTTLMDVLAGRKTGGYIEGSINISGYPKNQETFARVSGYCEQNDIHSPRVTVYESLLYSAWLRLSKDIDTKTRKMFVEEVMELVELNPL RDALVGLPGLDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGSLGH RSHKLIEYFEAVPGVPKIRDAYNPATWMLEISAPSMEAQLDVDFAEQYANSSLYQRNQEIIKELSTPAPGSKDLYFRTQYSQTFLTQCKACFWKQHWSYW RNPRYNAIRLFMTLAIGIIFGLIFWDKGQKTFSQQDLLNVFGAMYAAVLFLGATNAAGVQSIIAIERTVFYRERAAGMYSPLPYAFAQVAIEAIYVAVQT IVYSILLFSMMGFEWTAAKFLWFYYFIFMCFVYFTLFGMMVVALTPAPQIAAICMSFFTSFWNLFSGFLLPRPQIPIWWRWYYWCSPVAWTLYGLVTSQV GDKTNTISVPGESEDVPIKEFLKGYLGFEYDFLPAVAAAHLGWVVLFFFLFSYGIKFLNFQKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Potri.006G115000 [exp]	0	1
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Potri.002G114500 [exp]	2.44	0.8994
AT4G35160			O-methyltransferase family pro...		Potri.013G122000 [exp]	2.44	0.9069
AT3G53150		UGT73D1	UDP-glucosyl transferase 73D1 ...		Potri.016G097400 [exp]	3.60	0.9099	Pt-DOGT1.1
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Potri.016G120600 [exp]	4.58	0.8683
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Potri.001G112100 [exp]	4.89	0.8978
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.001G270404 [exp]	6.00	0.8895
AT1G06840			Leucine-rich repeat protein ki...		Potri.019G131800 [exp]	6.70	0.8898
AT4G37980		ELI3-1, ATCAD7	CINNAMYL-ALCOHOL DEHYDROGENASE...		Potri.009G063400 [exp]	8.12	0.8830	Pt-CAD.3
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Potri.005G248500 [exp]	8.66	0.8801	Ptr4CL14
AT4G27290			S-locus lectin protein kinase ...		Potri.011G126101 [exp]	9.32	0.8556

Compare expression of checked genes

Potri.006G115000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.