Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03650 1304 / 0 SBE2.2 starch branching enzyme 2.2 (.1) AT2G36390 1279 / 0 SBE2.1, BE3 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) AT3G20440 466 / 7e-151 EMB2729, BE1 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3) AT2G39930 62 / 1e-09 ATISA1, ISA1 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) AT4G09020 60 / 5e-09 ATISA3, ISA3 isoamylase 3 (.1) AT1G03310 52 / 2e-06 ATISA2, ISA2, DBE1, BE2 BRANCHING ENZYME 2, ARABIDOPSIS THALIANA ISOAMYLASE 2, debranching enzyme 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G251000 [exp] 835 / 0 AT5G03650 828 / 0.0 starch branching enzyme 2.2 (.1) Potri.001G359200 [exp] 459 / 4e-148 AT3G20440 1352 / 0.0 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3) Potri.006G070800 [exp] 73 / 6e-13 AT2G39930 1212 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Potri.018G132500 [exp] 69 / 8e-12 AT2G39930 1217 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Potri.002G100900 [exp] 56 / 2e-07 AT4G09020 1111 / 0.0 isoamylase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014382 [exp] 1345 / 0 AT2G36390 1253 / 0.0 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) Lus10023878 [exp] 1332 / 0 AT2G36390 1253 / 0.0 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) Lus10016012 [exp] 799 / 0 AT2G36390 818 / 0.0 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) Lus10012264 [exp] 799 / 0 AT2G36390 818 / 0.0 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) Lus10027725 [exp] 633 / 0 AT1G66950 1077 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Lus10000912 [exp] 431 / 2e-137 AT3G20440 1315 / 0.0 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3) Lus10003674 [exp] 197 / 3e-56 AT3G20440 477 / 7e-163 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3) Lus10003675 [exp] 174 / 4e-46 AT3G20440 766 / 0.0 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3) Lus10017150 [exp] 65 / 2e-10 AT2G39930 723 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Lus10021586 [exp] 65 / 3e-10 AT2G39930 1211 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00128 [poplar] [flax] Alpha-amylase Alpha amylase, catalytic domain CL0369 [poplar] [flax] GHD PF02806 [poplar] [flax] Alpha-amylase_C Alpha amylase, C-terminal all-beta domain CL0369 [poplar] [flax] GHD PF02922 [poplar] [flax] CBM_48 Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
Representative CDS sequence Show only first row Show all	>Potri.006G115100.3 pacid=42767334 polypeptide=Potri.006G115100.3.p locus=Potri.006G115100 ID=Potri.006G115100.3.v4.1 annot-version=v4.1 ATGGTGTACTGCGCTATATCAGGCGTACGTTTTCCTTGCCTTCCTTCAGTGTACAACACCAAGTCTCAATCAAGTTTCAATGGCGATCCTTTGTGTCGAA AGGGCCTCTCCTTTTTCTCGAAGAAAGACCCATTTTCTTGTAACTCTCCCTTCTATTTTTCTGCCAAAGTGAAGATGCTTGCTGGAAAGTCTTCTTACGA TTCCGATTCCCCAAATTTAGCTGTTACTACTTCTACTGCTACAACAACAACCACACCGACACCTGAGAAAGTCCTTGTCCCCCCCGATGGCAACGCTTCA GAAGATCCTCTGGTACCTCATGATGTAGAGTGTCTAACAATGGAAGATAATCAGATTGTTGAAGACAAGGAAAAGCAGGAGACATCTACTCCTTTGAGCG AGTCAATAATCATTGGTAAAACTGAAGCGAAATCTAGGTCTATCCCCCCACCTGGCTCTGGGCAGAGAATATATGAAATAGATCCAAGTTTGACAGGTTT CCGTCAACATCTTGATTACCGATATTCACAGTACAAAAGAATTCGTGAAGAAATTGACAAGTATGAAGGTGGTTTGGAAGTGTTTTCTCGTGGCTATGAA AAGCTTGGTTTCATACGCAGTGAAACAGGAATAACCTACAGGGAATGGGCACCAGGAGCTAAGTGGGCAGCATTGATTGGAGATTTTAACAATTGGAATC CCAATGCAGATGTCATGACCCAGAATGAATTTGGTGTCTGGGAAGTGTTCCTTCCAAACAATGCAGATGGTTCACCACCAATTCCCCATGGTTCTCGAGT AAAGATACGCATGGATACTCCTTCTGGCATTAAAGATTCTATTCCTGCTTGGATTAAGTTCTCAGTACAGGCTCCAGGAGAAATCCCATACAATGGCATT TATTATGATCCACCGGAGGAGGAAAAGTATATATTCAAACATCCTCAACCAAAGAGACCAGAGTCACTTAGGATTTATGAAGCTCATGTCGGAATGAGTA GTACGGAGCCATTAATCAACACATATGCCAACTTTAGAGATGATGTGCTTCCTCGGATCAAAAAACTTGGTTATAATGCTGTTCAGATTATGGCTATTCA AGAGCATTCATATTATGCTAGTTTTGGGTACCATGTCACAAATTATTTTGCACCCTGTAGTCGATGTGGAACCCCTGATGATCTGAAGTCTCTGATAGAT AGAGCTCACGAGTTAGGTCTGCTTGTTCTCATGGATATTGTTCACAGCCATGCATCGAACAATACTTTGGATGGTTTGAATATGTTCGATGGAACTGATA ATCACTACTTCCACTCTGGTTCACGGGGACATCATTGGATGTGGGACTCTCGCCTTTTCAACTATGGGAGCTGGGAAGTACTGAGGTTTCTTCTTTCAAA TGCAAGATGGTGGCTGGATGAATATAAGTTTGATGGGTTCAGATTTGATGGTGTGACTTCGATGATGTACACCCACCATGGGTTGCAGATGACTTTTACT GGAAACTACAATGAGTACTTTGGATATGCAACTGACATAGATGCTGTCGTATATCTGATGGTTGTTAATGATATGATTCATGGTCTCTTCCCTGATGCTG TTAGCATTGGTGAAGATGTCAGTGGAATGCCAACATTCTGCATTCCTGTCCAAGATGGTGGCGTGGGATTTGATTATCGCCTCCACATGGCCATTGCTGA TAAATGGATTGAGCTTCTCCAGAAGAAGGATGAAGACTGGAGAATGGGTGACATTGTACACACTCTCACTAACAGAAGGTGGCTGGAAAAGTGCGTTTCA TATGCTGAAAGTCATGACCAAGCTCTTGTTGGTGACAAGACCATTGCATTCTGGTTGATGGACAAGGATATGTACGACTTCATGGCTCTTGATAGACCAT CAACTCCTCTTGTAGATCGTGGAATAGCATTGCACAAAATGATCCGGCTTATTACCATGGGTTTAGGAGGAGAAGGATATTTGAATTTTATGGGAAATGA GTTTGGACACCCTGAGTGGATTGATTTCCCAAGGGGCGATCAGCGCCTTCCTACTGGTAAAATTATTCCAGGCAATAATAACAGTTTTGATAAATGCCGG CGTAGATTTGATCTAGGGGATGCAGAATATCTAAGATACCATGGAATGCAAGAATTTGATCGGGCAATGCAGCATCTTGAAGAAATCTATGGTTTCATGA CATCTGAGCACCAATATATATCACGGAAAAACGAAGGGGATCGAGTTATTGTCTTCGAAAGAGGGAACTTGGTTTTTGTCTTTAATTTTCATTGGACCAA CAGTTATTCAGATTACCGAGTAGGCTGCTTAAAGCCAGGAAAGTACAAGATTGTTTTAGATTCTGATGATCCATTGTTTGGAGGCTTCAAAAGGCTTGAT AAGGATGCTGAGTACTTCAGCTCAGAAGGGTGGTATGATGACCGGCCTCGTTCCTTCCTGGTGTATGCACCAAGTAGAACGGCTGTGGTCTATGCTCTGG TGGAGGATGAATTGGAACCTGCTGAGAGTGAAAATGAACCTGCTGAGGGCTGA
AA sequence Show only first row Show all	>Potri.006G115100.3 pacid=42767334 polypeptide=Potri.006G115100.3.p locus=Potri.006G115100 ID=Potri.006G115100.3.v4.1 annot-version=v4.1 MVYCAISGVRFPCLPSVYNTKSQSSFNGDPLCRKGLSFFSKKDPFSCNSPFYFSAKVKMLAGKSSYDSDSPNLAVTTSTATTTTTPTPEKVLVPPDGNAS EDPLVPHDVECLTMEDNQIVEDKEKQETSTPLSESIIIGKTEAKSRSIPPPGSGQRIYEIDPSLTGFRQHLDYRYSQYKRIREEIDKYEGGLEVFSRGYE KLGFIRSETGITYREWAPGAKWAALIGDFNNWNPNADVMTQNEFGVWEVFLPNNADGSPPIPHGSRVKIRMDTPSGIKDSIPAWIKFSVQAPGEIPYNGI YYDPPEEEKYIFKHPQPKRPESLRIYEAHVGMSSTEPLINTYANFRDDVLPRIKKLGYNAVQIMAIQEHSYYASFGYHVTNYFAPCSRCGTPDDLKSLID RAHELGLLVLMDIVHSHASNNTLDGLNMFDGTDNHYFHSGSRGHHWMWDSRLFNYGSWEVLRFLLSNARWWLDEYKFDGFRFDGVTSMMYTHHGLQMTFT GNYNEYFGYATDIDAVVYLMVVNDMIHGLFPDAVSIGEDVSGMPTFCIPVQDGGVGFDYRLHMAIADKWIELLQKKDEDWRMGDIVHTLTNRRWLEKCVS YAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPLVDRGIALHKMIRLITMGLGGEGYLNFMGNEFGHPEWIDFPRGDQRLPTGKIIPGNNNSFDKCR RRFDLGDAEYLRYHGMQEFDRAMQHLEEIYGFMTSEHQYISRKNEGDRVIVFERGNLVFVFNFHWTNSYSDYRVGCLKPGKYKIVLDSDDPLFGGFKRLD KDAEYFSSEGWYDDRPRSFLVYAPSRTAVVYALVEDELEPAESENEPAEG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03650		SBE2.2	starch branching enzyme 2.2 (....		Potri.006G115100 [exp]	0	1
AT4G23950			Galactose-binding protein (.1....		Potri.001G089700 [exp]	1.73	0.9207
AT5G36210			alpha/beta-Hydrolases superfam...		Potri.002G128700 [exp]	2.00	0.9206
AT3G05345			Chaperone DnaJ-domain superfam...		Potri.013G021000 [exp]	10.09	0.9038
AT4G35300		TMT2	tonoplast monosaccharide trans...		Potri.004G207100 [exp]	13.63	0.8208
AT2G17410	ARID		ARID/BRIGHT DNA-binding domain...		Potri.011G145450 [exp]	13.78	0.8821
AT1G11360			Adenine nucleotide alpha hydro...		Potri.019G119400 [exp]	14.83	0.8584
AT2G43180			Phosphoenolpyruvate carboxylas...		Potri.002G231000 [exp]	20.07	0.8870
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Potri.017G093200 [exp]	20.97	0.8786
AT2G47350			HIT zinc finger ;PAPA-1-like c...		Potri.013G008300 [exp]	21.02	0.8687
AT5G06530		AtABCG22, ABCG2...	Arabidopsis thaliana ATP-bindi...		Potri.016G065900 [exp]	27.74	0.8912

Compare expression of checked genes

Potri.006G115100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.