Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52910 244 / 3e-77 GRF ATGRF4 growth-regulating factor 4 (.1) AT4G37740 107 / 5e-25 GRF ATGRF2 growth-regulating factor 2 (.1) AT3G13960 104 / 2e-24 GRF ATGRF5 growth-regulating factor 5 (.1) AT2G22840 97 / 1e-21 GRF ATGRF1 growth-regulating factor 1 (.1) AT5G53660 87 / 6e-19 GRF ATGRF7 growth-regulating factor 7 (.1) AT2G36400 84 / 1e-17 GRF ATGRF3 growth-regulating factor 3 (.1) AT4G24150 84 / 2e-17 GRF ATGRF8 growth-regulating factor 8 (.1) AT2G06200 81 / 4e-17 GRF ATGRF6 growth-regulating factor 6 (.1) AT2G45480 77 / 3e-15 GRF ATGRF9 growth-regulating factor 9 (.1) AT2G42040 44 / 0.0001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G077500 [exp] 126 / 6e-33 AT3G13960 160 / 1e-45 growth-regulating factor 5 (.1) Potri.019G042300 [exp] 123 / 7e-32 AT3G13960 157 / 2e-44 growth-regulating factor 5 (.1) Potri.001G169100 [exp] 117 / 1e-29 AT3G13960 206 / 4e-63 growth-regulating factor 5 (.1) Potri.003G065000 [exp] 116 / 3e-29 AT3G13960 200 / 4e-61 growth-regulating factor 5 (.1) Potri.002G115100 [exp] 116 / 5e-28 AT2G22840 302 / 2e-95 growth-regulating factor 1 (.1) Potri.014G071800 [exp] 115 / 5e-28 AT2G45480 164 / 8e-46 growth-regulating factor 9 (.1) Potri.014G012800 [exp] 114 / 2e-27 AT2G22840 303 / 1e-95 growth-regulating factor 1 (.1) Potri.018G065400 [exp] 110 / 5e-27 AT3G13960 181 / 3e-53 growth-regulating factor 5 (.1) Potri.001G132600 [exp] 109 / 1e-26 AT4G37740 142 / 6e-38 growth-regulating factor 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014380 [exp] 189 / 1e-57 AT2G36400 181 / 5e-55 growth-regulating factor 3 (.1) Lus10020352 [exp] 127 / 3e-33 AT3G13960 167 / 2e-48 growth-regulating factor 5 (.1) Lus10009533 [exp] 127 / 4e-32 AT3G13960 162 / 7e-45 growth-regulating factor 5 (.1) Lus10023877 [exp] 109 / 6e-27 AT2G36400 109 / 5e-27 growth-regulating factor 3 (.1) Lus10011559 [exp] 110 / 3e-26 AT2G22840 290 / 3e-92 growth-regulating factor 1 (.1) Lus10019275 [exp] 109 / 6e-26 AT2G22840 283 / 1e-89 growth-regulating factor 1 (.1) Lus10019274 [exp] 109 / 7e-26 AT2G22840 261 / 4e-81 growth-regulating factor 1 (.1) Lus10011558 [exp] 108 / 1e-25 AT2G22840 268 / 2e-83 growth-regulating factor 1 (.1) Lus10028899 [exp] 95 / 8e-23 AT2G36400 117 / 1e-31 growth-regulating factor 3 (.1) Lus10008916 [exp] 94 / 1e-22 AT4G37740 115 / 2e-30 growth-regulating factor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08879 [poplar] [flax] WRC WRC PF08880 [poplar] [flax] QLQ QLQ
Representative CDS sequence Show only first row Show all	>Potri.006G115200.2 pacid=42769132 polypeptide=Potri.006G115200.2.p locus=Potri.006G115200 ID=Potri.006G115200.2.v4.1 annot-version=v4.1 ATGGACTTCCATCTGAAGCAATGGAGAAACCAGCATGAGGAGTCAGGGCAACAACCCTCTGCAAAGATGCCAAAACTCCTCATGGATCCCCATCAACCAC AACAACATCCACACTCATCTGGGTCTGCTGCCTTCCCTTTGTTTCTACCCGAGCCCAGCTGCAAAAATAGTAACCTGTCAGCATTTCCTGATTCAAACAC AGCTGCAAACACCAGACTTCCTAAGATCATGGGGAATTACTTTAGCCTGGAACAGTGGCAAGAGCTAGAGCTGCAGGCTTTGATCTACAGATTCATGTTA GCCGGTGCAGCTATTCCTCCGGAGCTCCTCCAACCAATCAAGAAAACCCTTCTTCATTCTCACCCCCCTCCATATTTCCTCCATCATCCTCTTCAATTAC ATTGCTCTTATTATCAGCCATCTTTATTGCAAACAGGGTATTGGGGAAGAGCAGCCATGGATCCGGAGCCAGGTCGGTGCCGGAGAACAGATGGGAAGAA ATGGCGGTGCTCCAGAGACGTGGTGGCAGGGCACAAGTATTGCGAGCGCCACTTGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAAAATCCCACA CCTACAATATCCACTAACATCACTTGCATTGGTATTGGAGGTGCGGGTGGTACCGCATCAGCTGCTGCTTTCAATTGCAGCACCACACCAACCATATCAG AGGTGGTCAATGAGACTCATTTTTCGCATACACTAGAATCCCCTTCCATTCATCTCAATCATAGCTCCAAAACTGAAAGCAAGGGCTTAATTGGACCACC ACCTCCAAATGAGGTTGGTAACAGGTCTGATGGCCACATTCTGTGGCATTTTTTTGATGACTGGCCACGATCCGTTGATGAATCCGACAATATGAATGCT GGAAGCTCAATGAACTCTTTAACCTGCCTCTCCGTTTCAATGCCTGGAAACTCACCAGCATCAGATGTGTCATTGAAATTGTCCACTGGGAATAATATTG CAGAGGAGGAGCCGGAGCCAGTCCCAGCCCCGATCCCTAGAGGCAATACAAGCAATTGGGCTGCTGCAGGATGGGGCACAAAAATTACAAACCAGGTGGT GACTTCAATGGGGGGACCTCTTGCTGAGGCGCTGAGGTCCTCCACTACCAAACTCATCTCCCACGAATGTTCTGCACCAGTTATGTCGCCCCACTGTTTC TGA
AA sequence Show only first row Show all	>Potri.006G115200.2 pacid=42769132 polypeptide=Potri.006G115200.2.p locus=Potri.006G115200 ID=Potri.006G115200.2.v4.1 annot-version=v4.1 MDFHLKQWRNQHEESGQQPSAKMPKLLMDPHQPQQHPHSSGSAAFPLFLPEPSCKNSNLSAFPDSNTAANTRLPKIMGNYFSLEQWQELELQALIYRFML AGAAIPPELLQPIKKTLLHSHPPPYFLHHPLQLHCSYYQPSLLQTGYWGRAAMDPEPGRCRRTDGKKWRCSRDVVAGHKYCERHLHRGRNRSRKPVENPT PTISTNITCIGIGGAGGTASAAAFNCSTTPTISEVVNETHFSHTLESPSIHLNHSSKTESKGLIGPPPPNEVGNRSDGHILWHFFDDWPRSVDESDNMNA GSSMNSLTCLSVSMPGNSPASDVSLKLSTGNNIAEEEPEPVPAPIPRGNTSNWAAAGWGTKITNQVVTSMGGPLAEALRSSTTKLISHECSAPVMSPHCF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G52910	GRF	ATGRF4	growth-regulating factor 4 (.1...		Potri.006G115200 [exp]	0	1
AT1G68130	C2H2ZnF	IDD14beta, IDD1...	indeterminate(ID)-domain 14 (....		Potri.008G140400 [exp]	2.44	0.8501
AT2G37710		RLK	receptor lectin kinase (.1)		Potri.009G036450 [exp]	3.74	0.8544
AT2G40470	AS2	ASL11, LBD15	ASYMMETRIC LEAVES2-LIKE 11, LO...		Potri.013G081200 [exp]	6.16	0.8539
AT1G70140		ATFH8	formin 8 (.1)		Potri.008G192900 [exp]	8.66	0.8368
AT5G24450			Transcription factor IIIC, sub...		Potri.017G007200 [exp]	13.67	0.8104
					Potri.002G200150 [exp]	13.85	0.8096
AT1G20270			2-oxoglutarate (2OG) and Fe(II...		Potri.002G016700 [exp]	14.83	0.8131
AT2G23360			Plant protein of unknown funct...		Potri.007G046100 [exp]	16.00	0.8153
					Potri.001G276904 [exp]	16.49	0.8021
AT5G60740		ABCG28	ATP-binding cassette G28, ABC ...		Potri.003G169000 [exp]	17.14	0.7614

Compare expression of checked genes

Potri.006G115200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.