Plant FIBer expression Database

Potri.006G115300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G03670 199 / 4e-57 unknown protein
AT2G36420 91 / 2e-19 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014378
[exp]
185 / 7e-52 AT5G03670 246 / 3e-75 unknown protein
Lus10027723
[exp]
180 / 3e-50 AT5G03670 236 / 2e-71 unknown protein
Lus10035565
[exp]
147 / 3e-38 AT5G03670 226 / 9e-68 unknown protein
Lus10023875
[exp]
120 / 9e-29 AT5G03670 231 / 2e-69 unknown protein
PFAM info
Representative CDS sequence
>Potri.006G115300.1 pacid=42770109 polypeptide=Potri.006G115300.1.p locus=Potri.006G115300 ID=Potri.006G115300.1.v4.1 annot-version=v4.1
ATGGCTCAAAAGCAATTACACGAGCTCTTGCAAGATGATCAAGAGCCATTCCAGCTAAAGAACTACATTGCTGACAGGCGTTGTCAGCTCAAAAGACCCA
GTATCCCGAAAACAAACTTGGTACAAGTCAAGAAGCGAAAACCCATCTCTCAAAAACATTTTTGCAAAAATGTTTGCCTTTTCTCTTTCCAAAACTCTCC
AGACCCGAGAAAATCCCCACTCTTCCAGTGCTCTCCTCCCAAAAGCCCTTGCAAAAGCCCTAATGCTATCTTCCTACACATCCCTGCAAGAACGGCCGCG
CTTCTTCTTGAAGCTGCCGTTAAGGTGCAAAAACAATCTTCGTCTCCCAAAACCAAGTCACAAAACAATGGGTTTGGTTTGTTTGGGACTTTATTAAAGA
AACTAACTCATCGTAACAAAACCAGAAATCATGAAATCCGTACTGGTAATCATGGGGGCAAAGTTTCAGTGAAGGAGATTCTAAGGTGGAATTCCTCAGT
TGGGCGTGGAAATTTATCCAATGAGATAGATCACCGCAAGCAGGAGCAGGGGCAGGAGATTATAATGGTTGATACGAGTATAAATGAGAAATGTGGTTGT
GAGAGGGGCTTTAATTCTTGTTGTAGCGGTCATATCGGTAGGCCTAGCAGTGAGGTTTGGTCAGAGAAATCCTTGGATTTGGATTTTGATACCTCAAGCA
GTACTAGCCAGTCCGAGGAGGATCAAAACGTCGATCATTTTGTTAACAAAGACATCATAGATCATGGTGATTTTGCTTCTAATGATAAGCAATGTTTCTG
TGACAGCCCTTTCCATTTTGTGCTTCAAAGAAGCCCTTCCACCGGTTGCCGCACCCCAGACTTCTCGTCTCCGGTCACTTCGCCTAGTCGCCACATATTT
GAGTGCAAAGAGAGCAATGGGGATGTAGAAAGCTTAAAGAAATTCAAAGAACAAGATGAGGAGGAGGAAAAAGAAGAAGAAGAAGAAGATAAGGAACAAT
GTAGTCCTGTTTCTGTTTTGGACCCACCCTTTGAAGATGATGACGATGGGAATGACGATCACAACGAGGACGACGGTTTTGATCTAGAATGCAGCTACGC
AATTGTACAGAGAGCAAAGAAACAGCTATTGCAGAAGCTGCGTAGATTTGAGAAACTGGCAGATTTGGATCCAGTTGAACTGGAGAGAAGAATGGCAGAG
CAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTGAGTGACCTTGAGGAAGAAGAGCAACGCAGTGAAGATGATGAGTTAATTTCGTCAGATAGGGAAAAGA
ACATCGAAACTTTTATCCTAGAAGAAATACGTAGTAAATCAAGCTTTTATCTTCCAAGAAAAATACAAAGAGACATGAAGAGATTGATCTCGGACCTCAT
TATCGAGGAAGGGGGAGGAAACGTTTTCTACAGAGAATCAATGGCAAAAAGGATCTGTAACAGGTTAGAGTCATGGAAAGAGGTAGAGTCCAACACCATT
GATATGATGGTAGGACAAGATTTTAGAAGGGAGCTCGATGGGTGGAAAGGAAACCGAGAGCAAGTGGAAGAGACAGCGTTGGAGATTGAACTTGGTATAG
TTGGCTTATTGGTGGAGGAACTGTCTGAGGAATTAGTTGCTTAA
AA sequence
>Potri.006G115300.1 pacid=42770109 polypeptide=Potri.006G115300.1.p locus=Potri.006G115300 ID=Potri.006G115300.1.v4.1 annot-version=v4.1
MAQKQLHELLQDDQEPFQLKNYIADRRCQLKRPSIPKTNLVQVKKRKPISQKHFCKNVCLFSFQNSPDPRKSPLFQCSPPKSPCKSPNAIFLHIPARTAA
LLLEAAVKVQKQSSSPKTKSQNNGFGLFGTLLKKLTHRNKTRNHEIRTGNHGGKVSVKEILRWNSSVGRGNLSNEIDHRKQEQGQEIIMVDTSINEKCGC
ERGFNSCCSGHIGRPSSEVWSEKSLDLDFDTSSSTSQSEEDQNVDHFVNKDIIDHGDFASNDKQCFCDSPFHFVLQRSPSTGCRTPDFSSPVTSPSRHIF
ECKESNGDVESLKKFKEQDEEEEKEEEEEDKEQCSPVSVLDPPFEDDDDGNDDHNEDDGFDLECSYAIVQRAKKQLLQKLRRFEKLADLDPVELERRMAE
QEEEEEEEEEVSDLEEEEQRSEDDELISSDREKNIETFILEEIRSKSSFYLPRKIQRDMKRLISDLIIEEGGGNVFYRESMAKRICNRLESWKEVESNTI
DMMVGQDFRRELDGWKGNREQVEETALEIELGIVGLLVEELSEELVA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G03670 unknown protein Potri.006G115300
[exp]
0 1
AT3G25590 unknown protein Potri.010G133600
[exp]
2.44 0.7649
AT3G15095 HCF243 high chlorophyll fluorescence ... Potri.001G373100
[exp]
6.00 0.7680
AT5G10270 CDKC;1 cyclin-dependent kinase C;1 (.... Potri.006G024600
[exp]
9.48 0.7875 Pt-CDC2.5
AT1G10890 unknown protein Potri.001G211000
[exp]
14.42 0.7572
AT4G31880 unknown protein Potri.018G109600
[exp]
15.71 0.7909
AT5G17690 AtLHP1, LHP1, T... TERMINAL FLOWER 2, LIKE HETERO... Potri.019G044400
[exp]
15.96 0.7059
AT2G31160 OBO1, LSH3 ORGAN BOUNDARY 1, LIGHT SENSIT... Potri.002G037500
[exp]
24.73 0.7094
AT1G44910 ATPRP40A pre-mRNA-processing protein 40... Potri.001G289800
[exp]
35.09 0.7386
AT3G54390 Trihelix sequence-specific DNA binding ... Potri.001G028400
[exp]
36.33 0.6615
AT1G80870 Protein kinase superfamily pro... Potri.001G043700
[exp]
39.68 0.7099

Potri.006G115300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.