Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09980 202 / 3e-67 Family of unknown function (DUF662) (.1) AT2G36410 192 / 7e-63 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) AT3G52920 184 / 5e-60 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2) AT5G03660 169 / 3e-54 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2) AT2G27740 128 / 7e-38 Family of unknown function (DUF662) (.1) AT3G52900 109 / 1e-30 Family of unknown function (DUF662) (.1) AT2G36355 92 / 6e-24 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G147500 [exp] 154 / 5e-48 AT2G27740 177 / 4e-57 Family of unknown function (DUF662) (.1) Potri.004G186900 [exp] 149 / 3e-46 AT2G27740 177 / 3e-57 Family of unknown function (DUF662) (.1) Potri.010G235600 [exp] 126 / 2e-37 AT3G09980 128 / 3e-38 Family of unknown function (DUF662) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023876 [exp] 215 / 2e-72 AT2G36410 239 / 9e-82 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) Lus10014379 [exp] 205 / 8e-68 AT2G36410 214 / 4e-71 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) Lus10035563 [exp] 202 / 4e-67 AT2G36410 238 / 8e-81 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) Lus10027724 [exp] 202 / 5e-67 AT2G36410 237 / 1e-80 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) Lus10019529 [exp] 149 / 4e-46 AT2G27740 201 / 9e-67 Family of unknown function (DUF662) (.1) Lus10043372 [exp] 145 / 8e-45 AT2G27740 207 / 6e-69 Family of unknown function (DUF662) (.1) Lus10034160 [exp] 102 / 5e-28 AT3G52900 154 / 2e-48 Family of unknown function (DUF662) (.1) Lus10043423 [exp] 99 / 9e-26 AT3G52900 150 / 4e-46 Family of unknown function (DUF662) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04949 [poplar] [flax] Transcrip_act Transcriptional activator
Representative CDS sequence Show only first row Show all	>Potri.006G115400.1 pacid=42768508 polypeptide=Potri.006G115400.1.p locus=Potri.006G115400 ID=Potri.006G115400.1.v4.1 annot-version=v4.1 ATGCAGAAAATGGAGCAGCAGCCTCAGCAACAGAACCAGCTAACGGTGCAAAACTCAGGCAGCCTTAGCTTTAGCAGCCAAATGTCTAAAGAAGATGAAG AGATGTCAAGGTCTGCTCTCTCTACTTTTAGAGCCAAAGAAGAAGAGATCGAAAAGAAGAAAATGGAGGTCAGAGAGAAGGTTCAAGCTCAGTTGGGCCG TGTTGAGGAGGAGACCAAGCGCTTAGCCATGATTCGTGAGGAGCTTGAAGCGCTTGCAGATCCCATGAGGAAGGAAGTTGCTGTTGTCCGCAAGAAGATT GATACAGTGAACAAAGAATTGAAGCCATTAGGACATACTGTGCAGAAGAAGGAGAAAGAATACAAGGATGCCCTTGAGGCCTTCAATGATAAGAACAAGG AGAAAGTACAGCTCATAACCAAATTAATGGAGTTTGAACAGCTCGTGAGTGAAAGCGAGAGGTTGAGGCTGAAAAAGCTGGAGGAGCTGAGTAAGAACAT AGACTCCATGCACTGA
AA sequence Show only first row Show all	>Potri.006G115400.1 pacid=42768508 polypeptide=Potri.006G115400.1.p locus=Potri.006G115400 ID=Potri.006G115400.1.v4.1 annot-version=v4.1 MQKMEQQPQQQNQLTVQNSGSLSFSSQMSKEDEEMSRSALSTFRAKEEEIEKKKMEVREKVQAQLGRVEEETKRLAMIREELEALADPMRKEVAVVRKKI DTVNKELKPLGHTVQKKEKEYKDALEAFNDKNKEKVQLITKLMEFEQLVSESERLRLKKLEELSKNIDSMH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G09980			Family of unknown function (DU...		Potri.006G115400 [exp]	0	1
AT5G20410		ATMGD2, MGD2	ARABIDOPSIS THALIANA MONOGALAC...		Potri.018G123000 [exp]	1.73	0.7776	MGDC.2
AT1G15410			aspartate-glutamate racemase f...		Potri.003G061800 [exp]	3.46	0.7400
AT5G10980			Histone superfamily protein (....		Potri.005G072300 [exp]	7.61	0.7693
AT5G10980			Histone superfamily protein (....		Potri.007G096700 [exp]	9.48	0.7312	HTR911
AT5G59550			zinc finger (C3HC4-type RING f...		Potri.008G058100 [exp]	10.04	0.6394	Pt-RHC2.2
AT3G53670			unknown protein		Potri.006G082100 [exp]	21.63	0.7076
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Potri.003G075000 [exp]	28.72	0.6582
AT5G59830			unknown protein		Potri.009G027800 [exp]	29.18	0.7516
AT2G36020		HVA22J	HVA22-like protein J (.1)		Potri.016G072600 [exp]	29.58	0.7395
AT5G48655			RING/U-box superfamily protein...		Potri.014G191400 [exp]	38.30	0.7143

Compare expression of checked genes

Potri.006G115400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.