Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36480 269 / 3e-76 ENTH/VHS family protein (.1.2.3) AT4G04885 183 / 2e-47 PCFS4 PCF11P-similar protein 4 (.1) AT2G36485 104 / 9e-26 ENTH/VHS family protein (.1) AT1G66500 82 / 6e-16 C2H2ZnF Pre-mRNA cleavage complex II (.1) AT5G43620 81 / 8e-16 Pre-mRNA cleavage complex II (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G020300 [exp] 177 / 3e-45 AT4G04885 386 / 9e-120 PCF11P-similar protein 4 (.1) Potri.011G024800 [exp] 174 / 5e-44 AT4G04885 364 / 1e-111 PCF11P-similar protein 4 (.1) Potri.017G017800 [exp] 83 / 5e-16 AT4G04885 194 / 3e-53 PCF11P-similar protein 4 (.1) Potri.007G134000 [exp] 49 / 2e-05 AT4G04885 101 / 2e-22 PCF11P-similar protein 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023867 [exp] 692 / 0 AT2G36480 246 / 2e-68 ENTH/VHS family protein (.1.2.3) Lus10035573 [exp] 580 / 0 AT2G36480 362 / 4e-110 ENTH/VHS family protein (.1.2.3) Lus10027715 [exp] 566 / 0 AT2G36480 363 / 2e-110 ENTH/VHS family protein (.1.2.3) Lus10014370 [exp] 481 / 4e-153 AT2G36480 248 / 2e-69 ENTH/VHS family protein (.1.2.3) Lus10006766 [exp] 177 / 3e-45 AT4G04885 650 / 0.0 PCF11P-similar protein 4 (.1) Lus10020058 [exp] 174 / 2e-44 AT4G04885 633 / 0.0 PCF11P-similar protein 4 (.1) Lus10018357 [exp] 169 / 1e-42 AT4G04885 653 / 0.0 PCF11P-similar protein 4 (.1) Lus10007652 [exp] 167 / 3e-42 AT4G04885 343 / 1e-104 PCF11P-similar protein 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G115600.6 pacid=42767365 polypeptide=Potri.006G115600.6.p locus=Potri.006G115600 ID=Potri.006G115600.6.v4.1 annot-version=v4.1 ATGGAAATGGAGAGTACGCGTAGATCCTTCGATAGATCAAGAGAACCAGGCTTAAAGAAACCTCGATTAGCTGAAGAGCAAGCAAACCATAAGGGCCGCC CGTTCACGCAGAGACCGGCAGCTGCACCTGCTGCAAGATATAGGCCTGGAGTTGATAGAGATTTAGAGAGTAATGATTCGAATCGCAGCAGTGCATACCA GCCACAGCCAGTGCCACAGCCACAGCAATACCAGGAGCTAGTGAGTCAGTATAAGACTGCTTTGGCGGAGCTGACTTTCAATTCAAAGCCAATAATCACT AACTTGACTATAATTGCGGGTGAGAATCTCCACGCCGCCAAAGCTGTTGCTGCGACAATCTGTGCCAATATTCTTGAGGTTCCCAGTGAGCAAAAGCTTC CATCTCTTTATCTTTTAGACAGCATTGTGAAGAATATTGGGAGGGATTACATAAAATACTTTGCTGCCAGACTGCCTGAGGTATTCTGTAAGGCATATAG GCAGGTTGATTCCTCTGTACATTCAAGTATGCGGCATCTTTTTGGAACTTGGAAAGGAGTTTTCCCTCCTCAGCCACTTCAGATGATTGAGAAGGAACTT GGCCTTGCTCCTGCAGTGAATGGTTCATCTGCAGGTGCTGCAGCGTCTAGGTCTGAGTCTCAGTCTCAACGGCCACCAAATAGCATCCATGTCAATCCCA AGTACTTGGAAAGGCAGCGCATTCAGCAGTCTAGTAGGGCAAAAGGAGTGTCTAATGTCCTGACTGTTCCAGTAGCCAACTCAATTGAGGATGTGGAGGG CCCAGACAGAGCTGTCAGTATTGATACTCGACGCCCATGGGTGGATCCTCCTGTTAAAACACAGACTCTTCAACGCTCACATAGAGAAGCATTAAATGAG CCTGTTCACGAGAAGAAAAAAATTGGTGCCATATATGAGGACTTTGAATATGGTTCTGATGTTTCAAGGAAGTCTGGCTTGGGAATTGGAAGAGCAAGTG GAAGGGTTGCTGAGCAAGGGCAAGGGCAGGAGAACCCATGTTATGGAACTAGCAGCAATGCGGCAGAGCTAATATCTGGGCAAAGAAACGGTTTTAATAT GAAGCACGGATTTCCAAATTACCCAGCATCCAAGTCTTCTATGGTTGATTTACATCTACAGCCAACACAGAGAATTGGAAGAAGTGAGACTGGGATATCT GCTAACTGGAAAAACTCTGAGGAAGAGGAGTACATTTGGGACATGCACTCTAGATTATCAGATCACAATGCAGCCGGTCTTTCCAATAACTCAAGGAAAG ATCATTGGATTCCTGATGATTCGGACAAAATGGATCTTGAAAGACTTGATGGAGAAACTTCTTCAGACTCGTTGTCTACCGAGCAGAAAGAGCATGCTAC CATTGGGTCCCGTTTATCCTCACCATGGAAATTGCCAGAGTCCCACTCAACAGATGGATTGATCCTTTCTGGAACTTCTACTACTAACACAGGTCACGTA GAGGGCTATTCAGCCACTGTTGGTGGTGTGGCTACAAGTTCAAGGTCTTCATTGGGCAGGATGGCTGTTCGACCACGCTTGGGTTCATCTCATATTGGAA AGGCAGGCTTAGCGTCTTCCACAAACACATCCTTGTTGTCCACTGAAACCTTAGGGCAACAAAAGTTTCAGTCTCAAGGTGCTGCATCACCATCTGGACA GTCACCCATACGCCAACGACCATCCTCGCCCGCATTTCAAGCATGCTATCCGCAATTGCAGAATTCAGGAGAGCAAGACTACCATCAATCCCAGTCAATG ACCCAGCCTGATTATAGGGCTCAATTTTCAGGAAATTTGCTGCCTTCAAATGTTCAGCTTGGTAGCTTGCCAAAATTGCACTCTGAAGATTTACAGGCTC CTTCATTGCCCTCTTTTCAACTAAGCCACCAGCATCGTCTTTCACAGCGACGACAACCAGATTCCAAAGAGTCTGAAGCTTTTGGTCAGATCCAGAGGCC ACACCTGCCCCCAGTCTCAAATTTTGGAACTTCATCAACTTCTGTAAGTTCTGCAGCAGACCATTTAAATCCATTTACTGCAGGAACTTCAGGACAATCT AGCACAAGTAGTTTGCTGGCTGCTGTTATGAAGACTGGAATTCTCTCCAAAATAAATTCTGGTGTCGTACCTGATCGAAACTTTCAGGATATTGGGAAAA TGCCATCACAGTCAATTATTCAGCCTCCTCTTCCAAGTGGGCCTCCCCCTCAGTTTTCGTTTTCAGAAGCCAGGATTGAATCTGCATCTTCAGCTCCTGC TCAGTCACAAGATAAGTTGCCAACAGTGTCGAATATTTCTCAGAGGAAAGACGAGCGGCCACCACCTCCACTTGGTTCTCCACCTTCATCAGAACAAACT ACTGATGCTGTTAATAAAGCCCCAAATCCAATTTCAAACCTTTTGAGCTCGTTAGTTGCAAAGGGTTTGATATCTACATCAAAGTCGGAGACATCATCTC CTTTGCCAACCCAGGTACCTAGTCAACTACAAAAGAAGAACCCAAGCATCACTTCACCTAGCTCTGAACCAATTTCCTCTGCCACTCTGCATTCATCCAC AGTAGGTGAAGCATCTATCCCAGAACCTGATACCAAATGTTCTGTTGCACTGTCTCAAACCACCAAAGTGGAAATAGATGATCTCATAGGATTGGAGTTT AAGCCAGAAGTAATCCGAGAACTGCATCCACCTGTGATCAGTTCACTCTTTGAGGACCTTCCTCATCGATGCAGCTTATGTGGCCTTCAACTTAAACTTA AAGAACGTCTTCATAGACACTTGGAGTGGCATAACCAGAGGAAGCCAGAATCGGATGGTATAAATGGGCCAACTAGGGGATGGTATGCTGATTTAGGGCA CTGGCTTACTGTAAATGACGGACTTCCATTGGGAGTTGAGTCTTCTTGTCCAATGGATGATTTTGAAGAGACAACGGAATGTGATGATAAAACGGTTCTT GCTCATGAAGATCATTGTGTTTGTGTTTTGTGTGGTAAGCTTTTTGAAGATTATTATTGTGAAGAAAGGAATAAATGGATGTTCAAAGGAGCAGTTCGTA TGACGTTACCATCCGGAGATGGTCAGATGGGAACCGCAAAGGAGAGTGCTAAAGGTCCCACCGTGCATGTGAATTGTATATCTGAAAGTTCACTTTGTGA CTTGGTACTAGCAAGCGGCATTAAAATGGAAAAGGATGTGTATGCCTCAACCTGA
AA sequence Show only first row Show all	>Potri.006G115600.6 pacid=42767365 polypeptide=Potri.006G115600.6.p locus=Potri.006G115600 ID=Potri.006G115600.6.v4.1 annot-version=v4.1 MEMESTRRSFDRSREPGLKKPRLAEEQANHKGRPFTQRPAAAPAARYRPGVDRDLESNDSNRSSAYQPQPVPQPQQYQELVSQYKTALAELTFNSKPIIT NLTIIAGENLHAAKAVAATICANILEVPSEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDSSVHSSMRHLFGTWKGVFPPQPLQMIEKEL GLAPAVNGSSAGAAASRSESQSQRPPNSIHVNPKYLERQRIQQSSRAKGVSNVLTVPVANSIEDVEGPDRAVSIDTRRPWVDPPVKTQTLQRSHREALNE PVHEKKKIGAIYEDFEYGSDVSRKSGLGIGRASGRVAEQGQGQENPCYGTSSNAAELISGQRNGFNMKHGFPNYPASKSSMVDLHLQPTQRIGRSETGIS ANWKNSEEEEYIWDMHSRLSDHNAAGLSNNSRKDHWIPDDSDKMDLERLDGETSSDSLSTEQKEHATIGSRLSSPWKLPESHSTDGLILSGTSTTNTGHV EGYSATVGGVATSSRSSLGRMAVRPRLGSSHIGKAGLASSTNTSLLSTETLGQQKFQSQGAASPSGQSPIRQRPSSPAFQACYPQLQNSGEQDYHQSQSM TQPDYRAQFSGNLLPSNVQLGSLPKLHSEDLQAPSLPSFQLSHQHRLSQRRQPDSKESEAFGQIQRPHLPPVSNFGTSSTSVSSAADHLNPFTAGTSGQS STSSLLAAVMKTGILSKINSGVVPDRNFQDIGKMPSQSIIQPPLPSGPPPQFSFSEARIESASSAPAQSQDKLPTVSNISQRKDERPPPPLGSPPSSEQT TDAVNKAPNPISNLLSSLVAKGLISTSKSETSSPLPTQVPSQLQKKNPSITSPSSEPISSATLHSSTVGEASIPEPDTKCSVALSQTTKVEIDDLIGLEF KPEVIRELHPPVISSLFEDLPHRCSLCGLQLKLKERLHRHLEWHNQRKPESDGINGPTRGWYADLGHWLTVNDGLPLGVESSCPMDDFEETTECDDKTVL AHEDHCVCVLCGKLFEDYYCEERNKWMFKGAVRMTLPSGDGQMGTAKESAKGPTVHVNCISESSLCDLVLASGIKMEKDVYAST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36480			ENTH/VHS family protein (.1.2....		Potri.006G115600 [exp]	0	1
AT4G31160		DCAF1	DDB1-CUL4 associated factor 1 ...		Potri.006G280200 [exp]	1.00	0.9347
AT3G26730			RING/U-box superfamily protein...		Potri.014G145300 [exp]	1.73	0.9239
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Potri.014G128300 [exp]	2.00	0.9261
AT2G27100	C2H2ZnF	SE	C2H2 zinc-finger protein SERRA...		Potri.004G196400 [exp]	4.00	0.9160
AT4G16280		FCA	RNA binding;abscisic acid bind...		Potri.010G147900 [exp]	6.32	0.9147
AT5G13950			unknown protein		Potri.002G237800 [exp]	6.48	0.9058
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Potri.015G147200 [exp]	7.48	0.9044
AT5G41150		ATRAD1, UVH1	ULTRAVIOLET HYPERSENSITIVE 1, ...		Potri.001G150400 [exp]	8.06	0.8978
AT4G02560	HD	LD	luminidependens, Homeodomain-l...		Potri.002G209216 [exp]	10.24	0.9057
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Potri.004G020300 [exp]	10.58	0.8967

Compare expression of checked genes

Potri.006G115600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.