Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03720 307 / 6e-100 HSF AT-HSFA3 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1) AT1G32330 239 / 8e-73 HSF ATHSFA1D heat shock transcription factor A1D (.1) AT4G17750 234 / 1e-70 HSF ATHSFA1A, ATHSF1, HSF1 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) AT5G16820 231 / 7e-70 HSF ATHSF3, ATHSFA1B, HSF3 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) AT3G02990 230 / 1e-69 HSF ATHSFA1E heat shock transcription factor A1E (.1) AT3G22830 216 / 7e-65 HSF AT-HSFA6B ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) AT2G26150 211 / 7e-64 HSF ATHSFA2 heat shock transcription factor A2 (.1.2) AT5G43840 192 / 4e-57 HSF AT-HSFA6A heat shock transcription factor A6A (.1) AT3G51910 186 / 3e-55 HSF AT-HSFA7A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A7A, heat shock transcription factor A7A (.1) AT3G63350 177 / 1e-51 HSF AT-HSFA7B HEAT SHOCK TRANSCRIPTION FACTOR A7B, winged-helix DNA-binding transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G138900 [exp] 244 / 2e-74 AT1G32330 408 / 2e-138 heat shock transcription factor A1D (.1) Potri.003G095000 [exp] 240 / 6e-73 AT1G32330 375 / 2e-125 heat shock transcription factor A1D (.1) Potri.005G214800 [exp] 222 / 1e-67 AT3G22830 355 / 4e-121 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.002G048200 [exp] 221 / 3e-67 AT3G22830 347 / 7e-118 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.008G157600 [exp] 216 / 1e-65 AT3G22830 388 / 3e-134 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.013G079800 [exp] 219 / 7e-65 AT5G16820 344 / 1e-113 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) Potri.010G082000 [exp] 211 / 1e-63 AT3G22830 376 / 3e-129 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.001G320900 [exp] 202 / 1e-58 AT4G13980 508 / 3e-178 HEAT SHOCK TRANSCRIPTION FACTOR A5, winged-helix DNA-binding transcription factor family protein (.1) Potri.017G059600 [exp] 202 / 1e-58 AT4G13980 499 / 1e-174 HEAT SHOCK TRANSCRIPTION FACTOR A5, winged-helix DNA-binding transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014369 [exp] 373 / 6e-125 AT5G03720 307 / 6e-101 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1) Lus10023866 [exp] 350 / 5e-116 AT5G03720 299 / 9e-98 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1) Lus10011065 [exp] 245 / 2e-75 AT1G32330 441 / 5e-152 heat shock transcription factor A1D (.1) Lus10000312 [exp] 242 / 4e-74 AT1G32330 437 / 1e-150 heat shock transcription factor A1D (.1) Lus10030956 [exp] 241 / 2e-73 AT1G32330 451 / 1e-155 heat shock transcription factor A1D (.1) Lus10040091 [exp] 239 / 5e-73 AT1G32330 453 / 1e-156 heat shock transcription factor A1D (.1) Lus10006618 [exp] 217 / 4e-65 AT3G22830 352 / 3e-119 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10039376 [exp] 216 / 4e-65 AT3G22830 363 / 3e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10014698 [exp] 212 / 2e-63 AT3G22830 363 / 4e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10040911 [exp] 212 / 8e-63 AT5G16820 370 / 4e-124 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00447 [poplar] [flax] HSF_DNA-bind HSF-type DNA-binding
Representative CDS sequence Show only first row Show all	>Potri.006G115700.3 pacid=42768699 polypeptide=Potri.006G115700.3.p locus=Potri.006G115700 ID=Potri.006G115700.3.v4.1 annot-version=v4.1 ATGAGCCCAGAAGAAGACGATACATACCCAAAATCACCTCACAAATATTCTTCATTAATGGATTGTCAACAGTCTTCTAGTGCAGGGTCGATATTTGTTG AAGATTTAAGCTTCCCTGCTGCCGCACCTTCTCCTTTAATGGACCTGGAGGCTTTCTCCTATGTAAGCCCGACGACTTCAGCTCATCCAGTATCATCATC GGCGACTGCCAACGAGGTGGATGAGGAAGAGGAGATGCCACGTCCTCTTGTGTGCTTACAGGAGAATCCAGTACCGCCTTTTCTATCGAAAACATATGAT CTGGTGGATGATCGGATGCTGGACCCAATAATTTCGTGGGGTTCCATTGGGGAGAGTTTCGTGGTGTGGGACCCCGAGGAGTTCGCCAGGCTTGTTCTCC CTCGGAATTTCAAGCACAACAATTTCTCCAGTTTTGTCCGACAACTCAATACTTATGGGTTCCGCAAGATTGATACTGATCGATGGGAGTTTGCCAATGA ATCTTTCAGAAGAGGCGAGAAGCATCTGTTGAAGAACATTCATAGGCGCAAATCAACACAGTCCCAGCAGGTTGGGAGCCACACGGGGTCTTTAACTGAA GCAGGGAGGTCTGGATTGGATAGTGAGGTAGAAAGATTAAGGAAGGAGCGGAGTGTGATGATGCAGGAAGTTATAGAACTGCAGAAGCAGCAGTCTGGGA CTGTTCACGATGTGCAATCAGTAAATCAGAGACTTCAGGCAGCAGAGCAAAGGCAGAAGCAGATGGTTTCGTTCTTGGCAAAGTTGTTTCAGAATCCAGC ATTCTTAGCCCGTCTCAAGCAAAAGAAGCAACAGGGAGAGATTGGTTCATCAAGGATGAAGAGGAAGTTTGTTAAGCACCAGCAACACCAACATGCCCTA CCTGAATCATCAATGGAAGGGCAGATTATGAGATACATGCCTGATTGGAGAAACATCACATTATCTTCTGTGGTCCCGGATACAAGTCCAGCCTCTATTG ATCAATCTCCTGATTATCTCTCAGAAGGCATGGTAGGCCTGGGTCTTGGCAGTGAAGCAATGCCATTACCTGAAATTGTTGCACCTGATGAATTTGCCAT CTCAGACGAATTAGGATTGGGACAGGGATTTATCAAAACACCAGAGCAGGTTGGAGAAGGGCAATCAAGCGTGCAATTTGAAGATCCCAAGCTCAAAGGA AAGATTGATATGAGCCCGCAAAATGAGGCTGGTCTTGAATATTTTGTCTCTTTTCCTGAGGATTTGGGGATGGAGAAAAGCTTTCCAGAATTATCTTCCC CTGGCATGGAAAGAATTGTTAAACAAGAGGATGTATGGAGTTTGGCATTTAACACTAGTGCTGGTATGTCTAGTTCTAGCAATGTTCCATGGGATAATTT TTTCGGATATGATATGCCAGAGTTGGGATCAACAGGTGGCTTCTCAGATATCTGGGATATAGGTTCTGGACAAGCAGGAGGAGGTTTGAGCATGGATAAG TGGCTGGCTGATGAAAGTCCCGTTGATGAGTCTGATAGTCAAGCTGGCCAGCCAAAAGATGATAAATAA
AA sequence Show only first row Show all	>Potri.006G115700.3 pacid=42768699 polypeptide=Potri.006G115700.3.p locus=Potri.006G115700 ID=Potri.006G115700.3.v4.1 annot-version=v4.1 MSPEEDDTYPKSPHKYSSLMDCQQSSSAGSIFVEDLSFPAAAPSPLMDLEAFSYVSPTTSAHPVSSSATANEVDEEEEMPRPLVCLQENPVPPFLSKTYD LVDDRMLDPIISWGSIGESFVVWDPEEFARLVLPRNFKHNNFSSFVRQLNTYGFRKIDTDRWEFANESFRRGEKHLLKNIHRRKSTQSQQVGSHTGSLTE AGRSGLDSEVERLRKERSVMMQEVIELQKQQSGTVHDVQSVNQRLQAAEQRQKQMVSFLAKLFQNPAFLARLKQKKQQGEIGSSRMKRKFVKHQQHQHAL PESSMEGQIMRYMPDWRNITLSSVVPDTSPASIDQSPDYLSEGMVGLGLGSEAMPLPEIVAPDEFAISDELGLGQGFIKTPEQVGEGQSSVQFEDPKLKG KIDMSPQNEAGLEYFVSFPEDLGMEKSFPELSSPGMERIVKQEDVWSLAFNTSAGMSSSSNVPWDNFFGYDMPELGSTGGFSDIWDIGSGQAGGGLSMDK WLADESPVDESDSQAGQPKDDK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03720	HSF	AT-HSFA3	ARABIDOPSIS THALIANA HEAT SHOC...		Potri.006G115700 [exp]	0	1
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Potri.001G037101 [exp]	7.21	0.7666
AT3G58790		GAUT15	galacturonosyltransferase 15 (...		Potri.014G142000 [exp]	9.89	0.6712
AT5G54980			Uncharacterised protein family...		Potri.008G052451 [exp]	11.66	0.7511
AT1G70210		ATCYCD1;1, CYCD...	CYCLIN D1;1 (.1)		Potri.007G005700 [exp]	13.78	0.7228
					Potri.001G016032 [exp]	13.96	0.6799
AT1G63860			Disease resistance protein (TI...		Potri.019G097720 [exp]	14.59	0.7562
AT5G67480		ATBT4, BT4	BTB and TAZ domain protein 4 (...		Potri.007G055100 [exp]	17.14	0.6766
AT2G18420			Gibberellin-regulated family p...		Potri.012G076700 [exp]	20.78	0.6927
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Potri.008G022300 [exp]	24.00	0.7126
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Potri.006G137100 [exp]	29.46	0.6909

Compare expression of checked genes

Potri.006G115700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.