Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03730 957 / 0 AtCTR1, SIS1, CTR1 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) AT4G24480 608 / 0 Protein kinase superfamily protein (.1) AT1G08720 343 / 3e-104 EDR1, ATEDR1 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) AT1G73660 342 / 4e-103 protein tyrosine kinase family protein (.1) AT1G18160 340 / 6e-103 Protein kinase superfamily protein (.1) AT5G11850 336 / 4e-102 Protein kinase superfamily protein (.1) AT5G49470 318 / 1e-99 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT3G06640 313 / 3e-95 PAS domain-containing protein tyrosine kinase family protein (.1) AT1G67890 313 / 2e-94 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT3G06620 312 / 2e-94 PAS domain-containing protein tyrosine kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G095750 [exp] 1255 / 0 AT5G03730 970 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.008G025800 [exp] 761 / 0 AT5G03730 670 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.010G234700 [exp] 738 / 0 AT5G03730 655 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.005G153100 [exp] 606 / 0 AT4G24480 1019 / 0.0 Protein kinase superfamily protein (.1) Potri.002G111200 [exp] 389 / 2e-121 AT4G24480 1020 / 0.0 Protein kinase superfamily protein (.1) Potri.015G040100 [exp] 348 / 3e-105 AT1G73660 593 / 0.0 protein tyrosine kinase family protein (.1) Potri.005G047600 [exp] 341 / 2e-103 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.013G034800 [exp] 340 / 5e-103 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.012G048400 [exp] 338 / 2e-101 AT1G73660 1065 / 0.0 protein tyrosine kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014368 [exp] 1023 / 0 AT5G03730 1030 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10023865 [exp] 1020 / 0 AT5G03730 1041 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10034154 [exp] 588 / 0 AT5G03730 618 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10042868 [exp] 539 / 9e-179 AT4G24480 988 / 0.0 Protein kinase superfamily protein (.1) Lus10028169 [exp] 498 / 7e-168 AT4G24480 823 / 0.0 Protein kinase superfamily protein (.1) Lus10031341 [exp] 460 / 9e-150 AT1G73660 682 / 0.0 protein tyrosine kinase family protein (.1) Lus10043428 [exp] 398 / 9e-126 AT5G03730 710 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10004124 [exp] 352 / 3e-108 AT1G08720 948 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10000937 [exp] 352 / 3e-108 AT1G08720 917 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10027247 [exp] 341 / 2e-103 AT1G18160 987 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0125 [poplar] [flax] Peptidase_CA PF14381 [poplar] [flax] EDR1 Ethylene-responsive protein kinase Le-CTR1
Representative CDS sequence Show only first row Show all	>Potri.006G115800.1 pacid=42769788 polypeptide=Potri.006G115800.1.p locus=Potri.006G115800 ID=Potri.006G115800.1.v4.1 annot-version=v4.1 ATGGAAATGCCCGGTCGAAGATCCAACTACACTCTCCTTAGCCAGCAGGCAGAAGAGCAACAGCAAGCAGCGGCAGCATACTACGAGTCGTCTCTCTCAG GTGACTCGAAAAACAACAAACTAACAATAAAGCAAGAGAGAAGCTTCGTGGATTGGGAGTCGGATCATAGAGCAATAGCAAATCAACAGCAAGGAAACAG TAATCGAATTGGTTTGTATCCATCCCCTGCAGCGATCGGGTTACAAAGGCAATCGAGCGGGAGTAGTTTCGGAGAGAGTTCGTTATCGGGAGAGTATTAC CCGCCGACGACTCTGTCAACGGGCGGAGGAAATGAGATTGATCAGGCGTATGGGTATGAGGATGGGAATTTTGTGAGGGCGGCGGCCAGACCTCCCGTGG ATGTATCTGCTAATAATGGATCGTCAGGGAAGAGTTGGGCGCAGCAAACTGAGGAAAGTTATCAGTTACAGCTGGCTTTGGCTTTGAGATTGTCGTCCGA GGCCACCTGTGCTGACGATCCTCATTTTTTGGATCCAGTTCCGGATGAATCAGCCTTGCGCTCCTCTACCTCTAACTCGCCAGAGGCCTTGTCTCATCGA TTTTGGGTGAATGGTTGCTTATCATACTTCAACAAAATTCCCGATGGATTTTACCTAATTCACGGGATGGATCCATATGTGTGGACTGTGTGCACTGATT TGCAAGATAATGGTCGTATTCCATCAATTGAATCACTGAAGTCTGTGGATCCCAATGCTGATTCTTCAATGGAAGTGGTTTTGATTGATCGGCGTAGTGA TCCGAACTTAAAGGAACTCCAAAATAGGGTCCATGGCATCTCTTGTAGCTCTATAACAACAAAAGAGGTAGTTGATCAGCTGGCAAAACTTGTTTGCAAC CGGATGGGGGGGCCAGCCAGCAGAGGAGAAGATGATTTCATTTCCATCTGGAAGGAATGCAGTGATAATCTAAAAGATTGCTTAGAATCTATTGTGGTTC CAATAGGCAGCCTATCCATTGGTCTATGTAGACATAGAGCTTTACTATTCAAGGTGTTAGCTGACACCATTGATTTACCATGTCGAATTGCAAAGGGCTG CAAATATTGTAAAAGGGATGATGGTTCCTCCTGTCTTGTTCGGTTCGGGCTTGACAGGGAGTATCTAGTTGACTTAGTTGGGAGGCCTGGTTTTTTATGC GAGCCTGATTCCTTGCTTAACGGTCCTTCTTCCATCTCAATTTCTTCCCCATTGCGCTTTCCTCGAATCAAATCAACTGAAAGTACTGTTGATTTTAGGC AATTGGCCAAACAATATTTCTTGGACTGCCAATCACTTAATCTTGTATTTGATGATGCGTCAACAGGTACTGTTCATGATGGTGAAGCTCCTGGATTTTC CATGTATCCTAAAAAAACTGACAGGACAGACTCGGAAATAAGTAACCATGTGCAACTCCCAAGTAACAGCAATGAAATTTCTCAGTTACCTCTGCCACAG AAAGTTAGTCGGATAAGTAATCATGTGCAACTCCCAAGCAAAGATTCCATGTTTTCTGAAGGTAGTCAACTGCTTTCTGGTAAAACAAGTAAAGAACTTT CACTTGATGCGGAGGATTCGGATATTCCATGGAATGATCTTGTTTTAAAAGAGAGAATTGGAGCAGGTTCTTTTGGAACTGTCCATCGTGCTGACTGGCA TGGCTCGGATGTTGCTGTGAAAATTCTCATGGAGCAAGACTTTCATGCTGATCGCTTTAAGGAATTTCTGAGGGAGGTTGCAATAATGAAACGCTTGCGG CATCCAAATATTGTTCTTTTTATGGGTGCAGTTACTCAACCGCCGAACTTATCCATAGTGACAGAATATTTATCAAGGGGTAGCTTGTATAGGCTTTTGC GCAAGTCAGGTGCAAGAGAGGTGCTGGATGAAAGGCGTCGGTTGAATATGGCTTATGATGTGGCAAAGGGTATGAATTATCTTCACAAACGTAATCCCCC CATTGTCCATAGAGATCTAAAATCTCCTAATCTTCTGGTTGACAAAAAATATACAGTGAAGGTTTGTGATTTTGGGCTTTCTCGTTTCAAAGCAAACACA TTTCTTTCATCAAAGTCAGCAGCAGGGACTCCTGAGTGGATGGCACCTGAAGTTCTCCGTGATGAACTTTCAAATGAGAAGTCTGATGTATACAGCTTTG GTGTAATCTTGTGGGAGCTAGCAACATTGCAGCAACCTTGGAGCAATTTAAATGCAGCACAGGTTGTGGCAGCTGTTGGTTTCAAGGGCAAAAGGCTTGA GATTCCACGGGATTTAAATCCTCATGTGGCTGCTTTAATAGAAGCGTGCTGGGCCAATGAACCATGGAAACGACCTTCCTTCGCCAGCATCATGGATTCA TTGAGGTCATTGATTAAACCTCCGACACCCCAGCCTGGTCTTGCGGGCATGACTTTGCTTGCCTGA
AA sequence Show only first row Show all	>Potri.006G115800.1 pacid=42769788 polypeptide=Potri.006G115800.1.p locus=Potri.006G115800 ID=Potri.006G115800.1.v4.1 annot-version=v4.1 MEMPGRRSNYTLLSQQAEEQQQAAAAYYESSLSGDSKNNKLTIKQERSFVDWESDHRAIANQQQGNSNRIGLYPSPAAIGLQRQSSGSSFGESSLSGEYY PPTTLSTGGGNEIDQAYGYEDGNFVRAAARPPVDVSANNGSSGKSWAQQTEESYQLQLALALRLSSEATCADDPHFLDPVPDESALRSSTSNSPEALSHR FWVNGCLSYFNKIPDGFYLIHGMDPYVWTVCTDLQDNGRIPSIESLKSVDPNADSSMEVVLIDRRSDPNLKELQNRVHGISCSSITTKEVVDQLAKLVCN RMGGPASRGEDDFISIWKECSDNLKDCLESIVVPIGSLSIGLCRHRALLFKVLADTIDLPCRIAKGCKYCKRDDGSSCLVRFGLDREYLVDLVGRPGFLC EPDSLLNGPSSISISSPLRFPRIKSTESTVDFRQLAKQYFLDCQSLNLVFDDASTGTVHDGEAPGFSMYPKKTDRTDSEISNHVQLPSNSNEISQLPLPQ KVSRISNHVQLPSKDSMFSEGSQLLSGKTSKELSLDAEDSDIPWNDLVLKERIGAGSFGTVHRADWHGSDVAVKILMEQDFHADRFKEFLREVAIMKRLR HPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLRKSGAREVLDERRRLNMAYDVAKGMNYLHKRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRFKANT FLSSKSAAGTPEWMAPEVLRDELSNEKSDVYSFGVILWELATLQQPWSNLNAAQVVAAVGFKGKRLEIPRDLNPHVAALIEACWANEPWKRPSFASIMDS LRSLIKPPTPQPGLAGMTLLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03730		AtCTR1, SIS1, C...	SUGAR-INSENSITIVE 1, CONSTITUT...		Potri.006G115800 [exp]	0	1
AT2G40940		ERS1	ethylene response sensor 1 (.1...		Potri.002G201500 [exp]	4.00	0.7079	ERS1.1,ETR1
AT1G26190			Phosphoribulokinase / Uridine ...		Potri.008G110500 [exp]	4.35	0.7210
AT3G59900		ARGOS	auxin-regulated gene involved ...		Potri.007G146401 [exp]	4.47	0.7170
AT2G23140			RING/U-box superfamily protein...		Potri.005G144700 [exp]	19.36	0.6606
AT3G12050			Aha1 domain-containing protein...		Potri.016G060100 [exp]	27.60	0.7083
AT5G03250			Phototropic-responsive NPH3 fa...		Potri.008G038600 [exp]	33.94	0.6811
AT3G29770		ATMES11	ARABIDOPSIS THALIANA METHYL ES...		Potri.017G096900 [exp]	38.60	0.7056
AT2G38480			Uncharacterised protein family...		Potri.016G128200 [exp]	38.96	0.6959
AT2G26070		RTE1	REVERSION-TO-ETHYLENE SENSITIV...		Potri.006G229900 [exp]	38.97	0.6384
AT3G43610			Spc97 / Spc98 family of spindl...		Potri.009G153300 [exp]	40.49	0.6744

Compare expression of checked genes

Potri.006G115800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.