Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36490 729 / 0 DML1, ROS1 REPRESSOR OF SILENCING1, demeter-like 1 (.1) AT5G04560 717 / 0 DME1, DME DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) AT3G10010 588 / 0 DML2 demeter-like 2 (.1) AT4G34060 459 / 6e-139 DML3 demeter-like protein 3 (.1.2) AT4G04957 81 / 3e-18 Domain of unknown function (DUF1985) (.1) AT3G47830 78 / 4e-15 DNA glycosylase superfamily protein (.1) AT1G05900 48 / 4e-05 ATNTH2 endonuclease III 2 (.1.2) AT2G31450 46 / 0.0002 ATNTH1 DNA glycosylase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G234400 [exp] 1009 / 0 AT5G04560 1026 / 0.0 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Potri.008G025900 [exp] 781 / 0 AT5G04560 1030 / 0.0 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Potri.001G150001 [exp] 501 / 1e-149 AT5G04560 560 / 2e-171 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Potri.015G071300 [exp] 74 / 1e-13 AT3G47830 343 / 9e-119 DNA glycosylase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027713 [exp] 729 / 0 AT5G04560 913 / 0.0 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Lus10035576 [exp] 725 / 0 AT2G36490 832 / 0.0 REPRESSOR OF SILENCING1, demeter-like 1 (.1) Lus10023864 [exp] 368 / 2e-103 AT5G04560 555 / 2e-170 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Lus10014367 [exp] 355 / 6e-99 AT5G04560 540 / 1e-164 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Lus10034120 [exp] 76 / 4e-14 AT3G47830 351 / 2e-121 DNA glycosylase superfamily protein (.1) Lus10043463 [exp] 63 / 2e-09 AT5G62570 306 / 1e-96 Calmodulin binding protein-like (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF15628 [poplar] [flax] RRM_DME RRM in Demeter PF15629 [poplar] [flax] Perm-CXXC Permuted single zf-CXXC unit
Representative CDS sequence Show only first row Show all	>Potri.006G116000.4 pacid=42767308 polypeptide=Potri.006G116000.4.p locus=Potri.006G116000 ID=Potri.006G116000.4.v4.1 annot-version=v4.1 ATGGATGTCGGCAGGCAGAACCAAAAGGAGTCATGGATTCCACAAAGTCATTTTAGGCATATCCTACCTCGTGTGATCTACACAGACAGGCAGGGAAACC AGCTAGACCAAGCAAGTAGTTCAGAAATAAAGGGGTTATCTGGATTGGGTGAGTGTTGTCCTCCCTCCAGTTCCAATTGGGAGGCGGCTGCTAGAGGTGC AGAAAAGGGCAGCGCCGGTAATGACTATGTCGAAACATCCAGAGAGCGCTCCACTGGTAATACAGCTACATGGAACCCTATGTCTTTGGACGACCCTCTG TTGGCTCTTGCAGATGCAGCTTCCAGGGAACATTTAAATCCATGGATTATTGGCAACTACACCCAGGAACCCAAGTGGGGGGAGGCAAACGCATTCCCTG CCGAGACCACCTCCCAGTTTGCTCCTGTAACGCCAGACAAGGGCATGAAAGTGGAGTCCAAAAAGATCATAGAAATGCAAAATTTATGCACACATTCAAG AAATCAAGAATTTAGTGATGATGGAATTGTTTCCAGGGGAGCTGATGCCAGTGGCCTCCAAACTGATGAAGAACTCCTACAGCGAGCAACAAATTCATCG TTTGCTGTTGGGTCCCCTGTGTTAAAGGAGAATCACAACCCTGACAGGAGAGACAGCGATGTTATTGACCTGAACAGAACACCACAGCAGAAACCAAGGA GGAAAAAGCACAGGCCCAAGGTCATCAACGAAGGCAAACGCAAAGGGCCACAAAAATCAACGACCCCCAAGTCTGCTGCTTCTACTGAAAAGCCAACTGG TAAGAGAAAGTATGTTCGAAAGAAGGCGCTCGGTAAAGCACCAGCAAGTTCCCCAGCAGAAGCAAATGGACAGTCTGCTGATCCAAAGATAATTGAACAG GCCAAGAAGTCTTGCAGGAGGGCCTTAAATTTTGATATAGAAAGGCAGCCTAGAGACAAAAGCTCTAAATGCAGTCCACCTTTTGACTTAGATTCTAAAC CAGAGGCACAAACAAGCGCAGCAATAAATCAATCAAAATCAACAGTGTTTCTTGGTCGTGGAATTGAAGTGATGGTGGAAACCACACAAGCAGGCATTGC CTATGACCTTACCCATTCTATAAATCAAATGCTTAAAAATTACGTATCATTGCGGGACAAAGAAGCACCAAGCACATTGTTTCCTGCCCAGACTAGTGAA CAACAGGGCAAACAGGATGGAAATTTACAAGAGAAAGGGGTAGATCAAGGGATTGCTCATGATGTACAGGAAGACACGGCACAAATCACTCCAATAAGTC CTAATGGCTCCAATTGCAGCACCAGCACAACTTCGACTTTGGAAGGACAGGCTAGCAGATCAAAGAGGAAGCATTCTGAACAACCAGACACCTGCAGCAC AAATCTAACTGGGATTCACTATAATTCTTTGAATGCTTACCAAACCATGCCTTCACTACTATTTCGAAAGAAAAAGAGGTCAGAAAAGGGACAAACTCCA GCCACATCATGCACATCATCCTCAGTGACTGCTACAAAGGACATTGCGATAGTAGAAACAACATGCCCACAGAAGGATCCTGAAAGAGATCCTTTCACAC CCAATATCAACTGTTGGATTTCTGCTGCTCCTCGTAATGGACTTCCAGGCAAGCATGTAGAAGAAAGAATAGATCTTCTCAATGACCTGCAAACTTTTGG CTATAGCATAAACCAGACAACAAGATCAACCAAAAAAAGGTCCAGATGTCCTACTAAAACTCGAGATCTGGCTTCAGTGACCAGAATTCCAGGGTGTGCA TTGCACCCAACAAACCGAAACAGACTTGTACCAGTGGATTGTAATGGGCAGCAAGTAGGAAACTCACACAGACCTCACATGAGTGTAGAAGCCGTGCTGG CAGAGATGAATGGGACATGGACAACCAAAAAGAGGACCAAGAAGAGAGCTTCTCTGGTTAATTCAGGTTCCTACAGTATAAATGCAGTGCCATATCATGG AAAAATCGTTGTATATAATCAGCACAAATTCTCAGCCAAGGCATTAGGTGCTCATCCAGAAGAAATGTGGAAACAAATGTTTTCTGTTGATTCAATAGTC GAGCAATTAAAGCATCTCGACATCAAGAGGGAAAGCAATGACATTGCATTTGAAGAGCGGAATGCACTTGTCCATTATAATATTGGAGATGATATGCGGA ATGCACTGGTCCTTTACAAAAGAGATGGCACCGTTGTACCCTATGATGGTTCTTTTGGATCCATCAGGAAGCGACGCCCACGCCCAAAGGTTGACCTAGA TCAAGAAACTAATAGAGTTTGGAAGCTTCTAATGGGAAACATCAATAGTGAAGGCATTGACGGAACAGATGATGAGAAGGCAAAATGGTGGGAAGAAGAA AGGGCAGTGTTCTGTGGACGGTCAAACTCATTTATAGCACGGATGCATCTTGTACAAGGGGACAGACGCTTCTCTCCGTGGAAGGGATCAGTTGTGGACT CGGTGATTGGAGTATTTCTTACCCAGAATGTCTCAGATCATCTCTCTAGTTCCGCATTTATGTCACTTGCCGCACGGTTTCCCCTCAAGTCAAAGAACAA GCCATGCTATGATGAGAGGACTAGCTTAGTGATTGAAAAACCAATAGAATTCATACCAGATTCAGAAGAGGGCATAAGATGGAATGAGGTGTCAAATCAA TCAATCTGTGGCCAGAGTTCGTTGACTATCCATGACATTGAGCCTGATGAAGAGCAAGAGGTAGTCAAAAGCAGTGAATCCTCTGAAAGTAGTACCGGCA TTGTCACCTCTGAAACTGAACCACATACATTCAGTCAATTGATGGCGAGCAGATCAACCATTGAGACCTCCATGACCAGAAGGGTAAGTTACATGGTAGA AGAAGGGACACAAATAATTGATGGAATCTCAAGTCAAAATTCAGTGATTTCTGGCCAAAACTCTGTGAATTCTCCAATTGGGCAAGCTTCTGAGAAAAAA GAATCATGCTCGGAGAACATCTCAGAAGGAGAATATCTCACTGATGGATCAAAGCTCAACAATTATAACGATTGCAGATCTTTCATGGAGCTTCTGCGAA AGGTTGGATCTCCCTTGATGCAAGATGCTTACAGCCAAGGAAATGGCAAGATGGACAGTTTGAATGATCATAAAAGCCCCATAGGAGTGTCCATGGTCGC ATCCAGTAATTGTTATTGGCACCTTACTTCTAACTCTGGAGCTGTGAAGGTTGACTGCTTTGATATGATCCCTAAAGAAACACAATATGGTGATATAGCC AAAAACAAAAAAGAAGACAGTGCAAAAGATCACAATGCCCTTGCAGTGGAAACGGCCAGTCAAATTACTGATCAAAATAAGCTGACCTTGATCAATCAAG AAGCATCAAGATCTCCCATGTCAAATAATCAGTCATGCATCGACATTCAAAAAGACAAGCATACGAGTGTCCAGTCTACAGCCATGCCTGTTGAAGACCC CAAAGTCACTGACAATTCATTGATTCAGATGCAAAATAACTACCTGCAGAAAAATCAATACTTACAAAACCTTTCAGGAGAAACCACGCATATAACTGGA AGTACCAGTGCATTTGATAGGCAGCAAAAGAATCGACAAAAAACAACAGAGTCTGAAATGATTGAGTTAGGTTATTCACAAAGTAAGGAGCTCAATGAGA TGAAAGCTGCCACCAGAAAAGCAAAAAGCAGAAGAGTTGGAAATGAAATAAGAGATGACGTTGACTGGGATGCTTTGAGAAAAGAGGCAGAAGCAAATGG AAAGAGAGAGGGAACAGAAAACACAATGGACTCACTGGACTGGGAAGCTGTAAGATGTGCAGATGTTAATGAGATTGCCAACACAATCAAAGAGCGTGGG ATGAACAACATACTTGCAGAACGGATAAAGAACTTGCTTAATAGACTGGTTAGAGAACATGGAAGCATTGATCTGGAATGGTTGAGAGATATTCCACCTG ACAAAGCAAAAGAGTATCTGCTAAGCATTAGAGGATTGGGGCTGAAGAGTGTGGAGTGCATACGGCTTCTGACACTTCATCATCTAGCATTCCCAGTTGA CACAAATGTCGGACGCATAGCTGTACGACTGGGATGGGTCCCCCTTCAGCCACTGCCTGAATCACTTCAGCTGCATCTTCTAGAGCTGTACCCTGTGCTG GAATCAATTCAAAAATACCTCTGGCCTCGATTGTGCAAACTTGACCAAAGAACACTGTATGAGCTTCATTATCAGATGATCACATTTGGAAAGGTATTCT GTACAAAAAGCAAACCAAATTGCAATGCATGTCCAATGAGAGGAGAATGCAGACATTTTGCAAGTGCATTTGCAAGTGCAAGGCTTGCCCTTCCAGGACC AGAAGAAAAAAGCATAGTGAGTGCAACCGAGAACATATCTGGCCAAAACCCTGCTGTGGATGCTGCTCAACTGCCCCTGCCCCTGCCCCTGCCCCTGCCC CAAACAGCTAAACAATCCGAAGGAAGTCAACAGCCAGAAGCAAGCAGGCTCGCAGAAAGCAAATCCAGAATCACCGACTATGAACCTATCATTGAAGAAC CATCATCACCAGAACCAGTGTCTACACAAGTAACAGAAAATGATATGGAGGATACATTCTGCGAGGATCCTGATGAAATTCCCATCATCAAACTTAACAT TGAAGAATTCACTCAGAATTTACAGAACTATATGCAAGAGAATATGGAACTTCAAGAAGCTGATATGTCCAAGGCCTTAGTTGCTTTAACTGCAGAAGCT GCCTCCATTCCCGTTCCCAAGCTTAAGAATGTTAGTCGGTTACGAACAGAGCACCAGGTATACGAACTTCCAGATTCTCATCCCCTTCTGCAAAGGTTGG ATAGGCGAGAACCTGATGATCCATGTTCATACCTTCTTGCCATATGGACACCAGGCGAAACAGCAAACTCCATTCAACCACTGGAAAGAAGTTGCAGCTT ACATGAATGTGGCAAATTGTGTGATGAGAAAACATGTTTCTCGTGCAACAACATACGGGAAGAAAATTCTCAAATTGTTCGAGGGACTCTCTTGATACCA TGTCGAACAGCGATGAGGGGAAGCTTTCCCCTCAATGGCACATATTTTCAAGTTAACGAGGTATTTGCTGACCATGATTCTAGTCTGAATCCAATTGATG TTCCTAGAGCATGGATATGGAACCTGCCCAGACGAACTGTGTACTTTGGAACCTCCATACCAACAATATTCAAAGGTTTGACAACAGCAGGTATTCAGCA TTGTTTCTGGAGAGGATATGTCTGCGTTAGGGGATTTGACCAGAAGACACGAGCACCCCGACCACTGATGGCCAGATTGCATTTTCCAGCTAGCAAATTA ACCCAGACAAAAAAGGGTGATATTAGTGGTCGGTAG
AA sequence Show only first row Show all	>Potri.006G116000.4 pacid=42767308 polypeptide=Potri.006G116000.4.p locus=Potri.006G116000 ID=Potri.006G116000.4.v4.1 annot-version=v4.1 MDVGRQNQKESWIPQSHFRHILPRVIYTDRQGNQLDQASSSEIKGLSGLGECCPPSSSNWEAAARGAEKGSAGNDYVETSRERSTGNTATWNPMSLDDPL LALADAASREHLNPWIIGNYTQEPKWGEANAFPAETTSQFAPVTPDKGMKVESKKIIEMQNLCTHSRNQEFSDDGIVSRGADASGLQTDEELLQRATNSS FAVGSPVLKENHNPDRRDSDVIDLNRTPQQKPRRKKHRPKVINEGKRKGPQKSTTPKSAASTEKPTGKRKYVRKKALGKAPASSPAEANGQSADPKIIEQ AKKSCRRALNFDIERQPRDKSSKCSPPFDLDSKPEAQTSAAINQSKSTVFLGRGIEVMVETTQAGIAYDLTHSINQMLKNYVSLRDKEAPSTLFPAQTSE QQGKQDGNLQEKGVDQGIAHDVQEDTAQITPISPNGSNCSTSTTSTLEGQASRSKRKHSEQPDTCSTNLTGIHYNSLNAYQTMPSLLFRKKKRSEKGQTP ATSCTSSSVTATKDIAIVETTCPQKDPERDPFTPNINCWISAAPRNGLPGKHVEERIDLLNDLQTFGYSINQTTRSTKKRSRCPTKTRDLASVTRIPGCA LHPTNRNRLVPVDCNGQQVGNSHRPHMSVEAVLAEMNGTWTTKKRTKKRASLVNSGSYSINAVPYHGKIVVYNQHKFSAKALGAHPEEMWKQMFSVDSIV EQLKHLDIKRESNDIAFEERNALVHYNIGDDMRNALVLYKRDGTVVPYDGSFGSIRKRRPRPKVDLDQETNRVWKLLMGNINSEGIDGTDDEKAKWWEEE RAVFCGRSNSFIARMHLVQGDRRFSPWKGSVVDSVIGVFLTQNVSDHLSSSAFMSLAARFPLKSKNKPCYDERTSLVIEKPIEFIPDSEEGIRWNEVSNQ SICGQSSLTIHDIEPDEEQEVVKSSESSESSTGIVTSETEPHTFSQLMASRSTIETSMTRRVSYMVEEGTQIIDGISSQNSVISGQNSVNSPIGQASEKK ESCSENISEGEYLTDGSKLNNYNDCRSFMELLRKVGSPLMQDAYSQGNGKMDSLNDHKSPIGVSMVASSNCYWHLTSNSGAVKVDCFDMIPKETQYGDIA KNKKEDSAKDHNALAVETASQITDQNKLTLINQEASRSPMSNNQSCIDIQKDKHTSVQSTAMPVEDPKVTDNSLIQMQNNYLQKNQYLQNLSGETTHITG STSAFDRQQKNRQKTTESEMIELGYSQSKELNEMKAATRKAKSRRVGNEIRDDVDWDALRKEAEANGKREGTENTMDSLDWEAVRCADVNEIANTIKERG MNNILAERIKNLLNRLVREHGSIDLEWLRDIPPDKAKEYLLSIRGLGLKSVECIRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL ESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSATENISGQNPAVDAAQLPLPLPLPLP QTAKQSEGSQQPEASRLAESKSRITDYEPIIEEPSSPEPVSTQVTENDMEDTFCEDPDEIPIIKLNIEEFTQNLQNYMQENMELQEADMSKALVALTAEA ASIPVPKLKNVSRLRTEHQVYELPDSHPLLQRLDRREPDDPCSYLLAIWTPGETANSIQPLERSCSLHECGKLCDEKTCFSCNNIREENSQIVRGTLLIP CRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPRAWIWNLPRRTVYFGTSIPTIFKGLTTAGIQHCFWRGYVCVRGFDQKTRAPRPLMARLHFPASKL TQTKKGDISGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36490		DML1, ROS1	REPRESSOR OF SILENCING1, demet...		Potri.006G116000 [exp]	0	1
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Potri.004G081800 [exp]	2.00	0.8787
AT3G43920		DCL3, ATDCL3	dicer-like 3 (.1.2.3)		Potri.018G047500 [exp]	2.82	0.8704
AT1G02080			transcription regulators (.1.2...		Potri.002G143000 [exp]	4.58	0.8722
AT1G79280		AtTPR, NUA	TRANSLOCATED PROMOTER REGION, ...		Potri.008G080900 [exp]	4.89	0.8760
AT1G19100			Histidine kinase-, DNA gyrase ...		Potri.015G079400 [exp]	5.19	0.8443
AT2G33490			hydroxyproline-rich glycoprote...		Potri.001G061500 [exp]	6.63	0.7922
AT3G14470			NB-ARC domain-containing disea...		Potri.004G197900 [exp]	7.34	0.8222
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Potri.019G054600 [exp]	8.12	0.8491
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Potri.001G066200 [exp]	10.48	0.7876
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Potri.011G094100 [exp]	10.48	0.8542

Compare expression of checked genes

Potri.006G116000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.