Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52940 509 / 0 ELL1, HYD2, FK FACKEL, EXTRA-LONG-LIFESPAN 1, Ergosterol biosynthesis ERG4/ERG24 family (.1.2) AT1G50430 134 / 2e-35 ST7R, PA, LE, 7RED, DWF5 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G005200 [exp] 127 / 6e-33 AT1G50430 753 / 0.0 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2) Potri.010G253200 [exp] 125 / 4e-32 AT1G50430 764 / 0.0 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003377 [exp] 529 / 0 AT3G52940 581 / 0.0 FACKEL, EXTRA-LONG-LIFESPAN 1, Ergosterol biosynthesis ERG4/ERG24 family (.1.2) Lus10033356 [exp] 132 / 1e-34 AT1G50430 751 / 0.0 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2) Lus10035723 [exp] 127 / 6e-33 AT1G50430 759 / 0.0 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2) Lus10034811 [exp] 105 / 2e-24 AT1G50430 724 / 0.0 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2) Lus10037309 [exp] 73 / 6e-14 AT1G50430 489 / 2e-173 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0115 [poplar] [flax] Steroid_dh PF06966 [poplar] [flax] DUF1295 Protein of unknown function (DUF1295)
Representative CDS sequence Show only first row Show all	>Potri.006G116200.4 pacid=42770198 polypeptide=Potri.006G116200.4.p locus=Potri.006G116200 ID=Potri.006G116200.4.v4.1 annot-version=v4.1 ATGGATCTGGATTATCTTCTTGTAATTCCCTCTTGGAAATCTGTTGGTATACTTGTAACATTCCTTACTTACCTCGCTATTGCTGGATCTGTACTCCCTG CCAAACTGGTTCCCGGTGTCACTTTACAAGACGGCTCTCGTCTCCATTATCGTTGCAATGGGCTGTTCTCAATGCTGTTGCTGGTTCTGCTTCTTGGTGT TGGAGCTAAGATGGAACTTTTATCACTTACTGTGATATCAGAAAGAGGACTCGAGCTCCTATCGGCAACATTCATTTTCAGTTTTCTAGTGACGTTAGCA CTCTATGCTGCTGGTTGCAAGTCTCGAAATCAGAGTTCTTCCCTTAAGCCTTGTGTTACAGGAAACCTAATACATGACTGGTGGTTTGGAGTACAGCTCA ATCCTTCTTTTTTGGGCATTGACCTCAAATTCTTCTTTGTTAGATCTGGAATGATGGGATGGTTATTTATCAATCTATCAGTTCTAGCAAAAACTATTCA GGGCGCCACCTTGAGCCATTCGATGATCCTTTACCAAATTTTCTGTCTGATATACATCCTGGACTACTTCTTTTATGAGGAGTACATGACCTCCACATGG GACATAATTGCTGAGAGATTAGGCTTCATGTTGGTGTTTGGAGACCTGGTCTGGATTCCTTTTACTTTCAGCATCCAGGGCTGGTGGCTTTTGGGTAACA AAGTGGAGTTGACAACTGCTGCTGTTATAGCAAATTGCTTTGTTTTCCTGATTGGATATCTGGTATTTAGAGGAGCTAACAAGCAAAAGCATGTCTTCAA GAAGAATCCCAAAGCACTTATATGGGGTAAGCCGCCAAAGGTTGTTGGGGGGAAGCTGCTTGCTTCTGGTTATTGGGGGGTCGCAAGGCATTGTAATTAC CTGGGTGACCTGTTGTTGGCACTATCCTTTAGTCTGCCTTGTGGAACAAGTTCTCCAGTCCCATACTTCTACCCGATTTATCTTCTTATCCTTCTAATAT GGAGAGAAAGGAGAGACGAGGCTCGCTGTGCAGAGAAGTACAAAGAAGTATGGGTGGAATACCGTAGACTTGTTCCATGGAGAATACTGCCATACGTTTA CTGA
AA sequence Show only first row Show all	>Potri.006G116200.4 pacid=42770198 polypeptide=Potri.006G116200.4.p locus=Potri.006G116200 ID=Potri.006G116200.4.v4.1 annot-version=v4.1 MDLDYLLVIPSWKSVGILVTFLTYLAIAGSVLPAKLVPGVTLQDGSRLHYRCNGLFSMLLLVLLLGVGAKMELLSLTVISERGLELLSATFIFSFLVTLA LYAAGCKSRNQSSSLKPCVTGNLIHDWWFGVQLNPSFLGIDLKFFFVRSGMMGWLFINLSVLAKTIQGATLSHSMILYQIFCLIYILDYFFYEEYMTSTW DIIAERLGFMLVFGDLVWIPFTFSIQGWWLLGNKVELTTAAVIANCFVFLIGYLVFRGANKQKHVFKKNPKALIWGKPPKVVGGKLLASGYWGVARHCNY LGDLLLALSFSLPCGTSSPVPYFYPIYLLILLIWRERRDEARCAEKYKEVWVEYRRLVPWRILPYVY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G52940		ELL1, HYD2, FK	FACKEL, EXTRA-LONG-LIFESPAN 1,...		Potri.006G116200 [exp]	0	1
AT3G18800			unknown protein		Potri.019G006500 [exp]	1.41	0.8979
AT2G34690		ACD11	ACCELERATED CELL DEATH 11, Gly...		Potri.006G051800 [exp]	5.47	0.8635	ACD11.1
AT3G60600		(AT)VAP, (AT)VA...	VAMP/SYNAPTOBREVIN-ASSOCIATED ...		Potri.002G144000 [exp]	8.00	0.8612
AT2G46170			Reticulon family protein (.1.2...		Potri.002G165400 [exp]	8.83	0.8828
AT1G79760		DTA4	downstream target of AGL15-4 (...		Potri.001G189400 [exp]	9.21	0.8766	DTA4.1
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Potri.015G059100 [exp]	10.00	0.8785
AT5G41760			Nucleotide-sugar transporter f...		Potri.001G094600 [exp]	10.58	0.8531
AT5G67260		CYCD3;2	CYCLIN D3;2 (.1)		Potri.005G141900 [exp]	18.33	0.8668	CYCD3.4
AT4G09550		ATGIP1	ARABIDOPSIS ATGCP3 INTERACTING...		Potri.006G035900 [exp]	20.63	0.8117
AT2G44620		MTACP1, MTACP-1	mitochondrial acyl carrier pro...		Potri.002G135600 [exp]	21.35	0.8691

Compare expression of checked genes

Potri.006G116200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.