Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05800 97 / 2e-22 unknown protein AT3G11290 95 / 1e-21 unknown protein AT3G11310 70 / 5e-13 unknown protein AT2G24960 63 / 1e-10 unknown protein AT2G19220 61 / 3e-10 unknown protein AT4G02210 52 / 3e-07 unknown protein AT4G02550 41 / 0.0007 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G061450 [exp] 412 / 2e-145 AT5G05800 111 / 2e-27 unknown protein Potri.008G074066 [exp] 402 / 2e-141 AT5G05800 92 / 1e-20 unknown protein Potri.001G339400 [exp] 398 / 4e-140 AT5G05800 107 / 6e-26 unknown protein Potri.007G118701 [exp] 382 / 8e-134 AT5G05800 109 / 6e-27 unknown protein Potri.010G190650 [exp] 381 / 3e-133 AT5G05800 104 / 6e-25 unknown protein Potri.010G132850 [exp] 353 / 2e-122 AT5G05800 100 / 1e-23 unknown protein Potri.004G230401 [exp] 355 / 3e-122 AT5G05800 100 / 4e-23 unknown protein Potri.003G192350 [exp] 354 / 4e-122 AT5G05800 100 / 4e-23 unknown protein Potri.003G006700 [exp] 352 / 7e-122 AT5G05800 99 / 3e-23 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014257 [exp] 65 / 3e-11 AT3G14820 282 / 1e-89 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016838 [exp] 61 / 7e-11 AT2G24960 71 / 4e-14 unknown protein Lus10025958 [exp] 62 / 1e-10 AT2G24960 102 / 4e-24 unknown protein Lus10002039 [exp] 55 / 3e-08 AT3G11290 91 / 2e-20 unknown protein Lus10013421 [exp] 54 / 5e-08 AT4G02210 418 / 1e-144 unknown protein Lus10024329 [exp] 53 / 1e-07 AT5G05800 81 / 7e-17 unknown protein Lus10010304 [exp] 52 / 3e-07 AT4G02210 395 / 1e-135 unknown protein Lus10026250 [exp] 43 / 0.0003 AT2G24960 750 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF12776 [poplar] [flax] Myb_DNA-bind_3 Myb/SANT-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G116400.3 pacid=42767379 polypeptide=Potri.006G116400.3.p locus=Potri.006G116400 ID=Potri.006G116400.3.v4.1 annot-version=v4.1 ATGGATGGGTCGGAAAGTCACGACAAAGCTTCTTGGACCAAGGCAATGTTGCACACATTTTGCGATATATGCATCAAAGCTATCGAGAAAGGGATGAGGC CTAATACTCACTTCGACAAAGCTGGATGGAAATTTATTATCACTGCATTCAAAGAACAAACTGGACATTCGTTCACTAAATCACAACTGAAGAACAAATG GGACGGAATTAAAAAGGACTGGAGGATTTGGAAAAGGCTAATATCTGAAACTGGTGTTGGATGGAGCTCTGAACTTGGTACAATCTCCGCATCTGATGAA TGGTGGAAAACTAAAATACAGGAAATTAGAGGAGCAAAGAAGTTTAGGCATGTCGGCATAGAGCCAACATTGTGTGCAAAATATGACACAATGTTCAGTA ACATTGTCGCAACTGGACAACATGCATGGGCCCCATCTCAAGGAATGATTTCTGAAGAAGATCAAGGTGGTGATGGATTGGGAAATTCAAGTAATGTTGG CATAAATCTCAAGGAAGGAATTGGCGATTCAGAGGTGGATGTTGTTCCTGATTTTGTGGAAGATGTTAGTAGGATGGTGGCTGGTTGTAATGTCCCAAAT AGCAGTAGCAACCACAGTAGTGTTAAAAGAAAAGCTACTGAAACCTCCATACCTCAACCTCAAAAAAAAAAGGGGGGGTCTGGAATGGGAGCTAAGTTAT GCTCACGTTTAGATCGACTTCTTGAGAGTGTTTTGATTGCTAGTAATTGTACAGTGAATTCAAGAGACAAGAAAGGATGTAGCATTGAGGAGGTAATGGA AGAGTTTCATTCAATACATGGTGTTGACTTTGGAAGTCCAATACACATCTTCGCAACAGAATTCTTCCGTGGAAGAAGCAAAAGGGAGATGTGGAAAGCA ATGGGAAATCTTGAGAGAAAATACTCTTGGTTGAAAATAATGTACGAACGACAATCAAAACAGTAG
AA sequence Show only first row Show all	>Potri.006G116400.3 pacid=42767379 polypeptide=Potri.006G116400.3.p locus=Potri.006G116400 ID=Potri.006G116400.3.v4.1 annot-version=v4.1 MDGSESHDKASWTKAMLHTFCDICIKAIEKGMRPNTHFDKAGWKFIITAFKEQTGHSFTKSQLKNKWDGIKKDWRIWKRLISETGVGWSSELGTISASDE WWKTKIQEIRGAKKFRHVGIEPTLCAKYDTMFSNIVATGQHAWAPSQGMISEEDQGGDGLGNSSNVGINLKEGIGDSEVDVVPDFVEDVSRMVAGCNVPN SSSNHSSVKRKATETSIPQPQKKKGGSGMGAKLCSRLDRLLESVLIASNCTVNSRDKKGCSIEEVMEEFHSIHGVDFGSPIHIFATEFFRGRSKREMWKA MGNLERKYSWLKIMYERQSKQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05800			unknown protein		Potri.006G116400 [exp]	0	1
					Potri.010G001200 [exp]	4.89	0.7250
AT1G24330			ARM repeat superfamily protein...		Potri.010G058000 [exp]	10.77	0.6211
AT2G15220			Plant basic secretory protein ...		Potri.001G299600 [exp]	10.81	0.6512
AT1G33170			S-adenosyl-L-methionine-depend...		Potri.001G454300 [exp]	11.83	0.7019
AT4G35240			Protein of unknown function (D...		Potri.004G182900 [exp]	12.24	0.6685
AT3G63220			Galactose oxidase/kelch repeat...		Potri.002G050600 [exp]	14.42	0.6223
AT1G08500		AtENODL18	early nodulin-like protein 18 ...		Potri.001G273000 [exp]	15.49	0.6210
AT1G76340		GONST3	golgi nucleotide sugar transpo...		Potri.008G177700 [exp]	19.36	0.6225
					Potri.002G076300 [exp]	23.68	0.6940
AT5G57110		AT-ACA8, ACA8	"AUTOINHIBITED CA2+ -ATPASE, I...		Potri.018G139900 [exp]	28.16	0.5905

Compare expression of checked genes

Potri.006G116400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.