Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42820 294 / 2e-99 C3HZnF ATU2AF35B Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT1G27650 292 / 1e-98 C3HZnF ATU2AF35A U2 snRNP auxiliary factor small subunit, putative (.1.2) AT3G44785 110 / 2e-30 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT1G10320 119 / 7e-30 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G188900 [exp] 318 / 1e-108 AT5G42820 311 / 4e-106 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.005G258000 [exp] 294 / 9e-100 AT1G27650 352 / 1e-122 U2 snRNP auxiliary factor small subunit, putative (.1.2) Potri.002G003000 [exp] 283 / 3e-95 AT1G27650 349 / 2e-121 U2 snRNP auxiliary factor small subunit, putative (.1.2) Potri.009G149600 [exp] 115 / 1e-32 AT1G27650 137 / 1e-41 U2 snRNP auxiliary factor small subunit, putative (.1.2) Potri.004G228600 [exp] 116 / 7e-29 AT1G10320 462 / 1e-151 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008648 [exp] 330 / 3e-113 AT5G42820 358 / 6e-125 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10003375 [exp] 328 / 3e-112 AT5G42820 357 / 3e-124 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10002845 [exp] 328 / 3e-112 AT5G42820 355 / 1e-123 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10009389 [exp] 316 / 8e-108 AT5G42820 362 / 3e-126 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10020540 [exp] 313 / 1e-107 AT1G27650 323 / 7e-112 U2 snRNP auxiliary factor small subunit, putative (.1.2) Lus10038139 [exp] 120 / 5e-30 AT1G10320 570 / 0.0 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10010687 [exp] 65 / 2e-11 AT1G10320 288 / 9e-88 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [poplar] [flax] CCCH_zf PF00642 [poplar] [flax] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar) CL0221 [poplar] [flax] RRM PF13893 [poplar] [flax] RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.006G116700.3 pacid=42767778 polypeptide=Potri.006G116700.3.p locus=Potri.006G116700 ID=Potri.006G116700.3.v4.1 annot-version=v4.1 ATGGCGGAGCACTTAGCATCCATATTCGGGACAGAGAAAGACAGGGTGAACTGTCCTTTTTACTTCAAGATCGGAGCCTGCAGACATGGTGATCGATGCT CAAGACTCCACACAAAGCCGACAATCAGCCCAACCCTGTTGCTCTCCAACATGTACCAGAGACCTGACATGCTCACTCCTGGAGTGGATCCTCAGGCTCA ATCCCAGTCCCTCGATCCCCGGAAGATCCAAGACCACTTTGAGGATTTTTATGAGGATTTGTTTGAAGAACTCAGCAAGTATGGTGATATTGAGAGCTTA AATATCTGTGATAATCTTGCTGACCACATGGTGGGTAATGTGTATGTCCAGTTTAGAGAAGAAGAGCACGCTGCTAATGCCCTTCGCAATCTTAACGGAA GGTTTTATGCAGGGCGACCCATCATTGTTGACTTTTCTCCTGTCACGGATTTCCGCGAAGCTACATGTAGGCAATATGAGGAAAATGTTTGCAATCGAGG TGGCTACTGCAACTTCATGCATCTTAAGAAGATTAGCAGGGAATTGAGGAGGCAGTTATTTGGGAGGAACAGACGAAGACGTAGCCGCAGTAGAAGCCAT AGTCCTGATAGGCACCGTGGTCATGAGGAGCGTCCACATGGTGGCCGTGGTTTGAATAGGAGAGAGGATGACAGGGAGCATCACAATGAAAGGGGCAGGA GGCCTAGAAGCCGAAGTCCTGCACGCAGGGGAGGACGAAGTAGCCCTGGGGGGAGGAGAAACAGGAGTCCTGTCAGAGAGAGTAGTGCTGAAAGAAGGGC TAAGATTGAAAAGTGGAACAGGGAAAAGGAACAGACAGATTCTGGTGGTAGAGGTGATAGCAGAAACCCTGAAAATGACAGGGATAACAGTGACTTTGCT GAGAATGGTGGCCATTATGATGATGCCCAGCACTAG
AA sequence Show only first row Show all	>Potri.006G116700.3 pacid=42767778 polypeptide=Potri.006G116700.3.p locus=Potri.006G116700 ID=Potri.006G116700.3.v4.1 annot-version=v4.1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLLLSNMYQRPDMLTPGVDPQAQSQSLDPRKIQDHFEDFYEDLFEELSKYGDIESL NICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRELRRQLFGRNRRRRSRSRSH SPDRHRGHEERPHGGRGLNRREDDREHHNERGRRPRSRSPARRGGRSSPGGRRNRSPVRESSAERRAKIEKWNREKEQTDSGGRGDSRNPENDRDNSDFA ENGGHYDDAQH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42820	C3HZnF	ATU2AF35B	Zinc finger C-x8-C-x5-C-x3-H t...		Potri.006G116700 [exp]	0	1
AT3G49430		SRP34A, SR34a, ...	Serine/Arginine-Rich Protein S...		Potri.012G021800 [exp]	10.00	0.6795
AT3G02920		ATRPA32B	Replication protein A, subunit...		Potri.018G091700 [exp]	11.66	0.6395
AT3G43590			zinc knuckle (CCHC-type) famil...		Potri.004G193500 [exp]	12.00	0.6569
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Potri.004G201900 [exp]	13.03	0.6866
AT1G26120		ICME-LIKE1	Isoprenylcysteine methylestera...		Potri.010G132200 [exp]	14.69	0.6034
AT3G21175	GATA	GATA24, TIFY2B,...	ZIM LIKE 1, GATA TRANSCRIPTION...		Potri.017G042200 [exp]	23.02	0.6297
AT1G68670	GARP		myb-like transcription factor ...		Potri.008G117500 [exp]	24.65	0.6163
AT1G15280			CASC3/Barentsz eIF4AIII bindin...		Potri.003G056500 [exp]	34.46	0.6499
AT2G38410			ENTH/VHS/GAT family protein (....		Potri.006G106500 [exp]	36.51	0.5943
AT1G13790		FDM4	factor of DNA methylation 4, X...		Potri.010G184800 [exp]	37.14	0.6098

Compare expression of checked genes

Potri.006G116700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.