Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03760 928 / 0 ATCSLA9, RAT4, CSLA9, ATCSLA09 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT5G22740 833 / 0 ATCSLA2, ATCSLA02 CELLULOSE SYNTHASE-LIKE A 2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A02, cellulose synthase-like A02 (.1) AT1G23480 757 / 0 ATCSLA3, ATCSLA03 cellulose synthase-like A3 (.1.2.3) AT2G35650 715 / 0 ATCSLA7, CSLA7, ATCSLA07 CELLULOSE SYNTHASE LIKE A7, cellulose synthase like (.1) AT4G13410 709 / 0 ATCSLA15 CELLULOSE SYNTHASE LIKE A15, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT1G24070 701 / 0 ATCSLA10 CELLULOSE SYNTHASE LIKE A10, cellulose synthase-like A10 (.1) AT3G56000 655 / 0 ATCSLA14 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE A14, cellulose synthase like A14 (.1) AT5G16190 650 / 0 ATCSLA11 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE A11, cellulose synthase like A11 (.1) AT4G16590 531 / 0 ATCSLA1, ATCSLA01 CELLULOSE SYNTHASE-LIKE A1, cellulose synthase-like A01 (.1) AT4G31590 444 / 2e-149 ATCSLC5, ATCSLC05 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G234100 [exp] 894 / 0 AT5G03760 870 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.008G026400 [exp] 873 / 0 AT5G03760 854 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.009G149700 [exp] 847 / 0 AT5G22740 910 / 0.0 CELLULOSE SYNTHASE-LIKE A 2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A02, cellulose synthase-like A02 (.1) Potri.004G189000 [exp] 835 / 0 AT5G22740 927 / 0.0 CELLULOSE SYNTHASE-LIKE A 2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A02, cellulose synthase-like A02 (.1) Potri.018G009300 [exp] 446 / 7e-150 AT4G31590 1077 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Potri.006G270900 [exp] 444 / 3e-149 AT4G31590 1085 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Potri.002G114200 [exp] 428 / 7e-143 AT4G07960 1031 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Potri.005G146900 [exp] 425 / 9e-142 AT4G07960 1050 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Potri.002G248400 [exp] 414 / 1e-137 AT3G07330 957 / 0.0 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008646 [exp] 912 / 0 AT5G03760 890 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10035580 [exp] 823 / 0 AT5G03760 805 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10009387 [exp] 814 / 0 AT5G22740 892 / 0.0 CELLULOSE SYNTHASE-LIKE A 2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A02, cellulose synthase-like A02 (.1) Lus10020539 [exp] 575 / 0 AT5G22740 612 / 0.0 CELLULOSE SYNTHASE-LIKE A 2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A02, cellulose synthase-like A02 (.1) Lus10025886 [exp] 437 / 2e-146 AT3G07330 994 / 0.0 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Lus10026923 [exp] 437 / 2e-146 AT4G31590 1078 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Lus10020120 [exp] 434 / 3e-146 AT4G31590 1012 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Lus10018651 [exp] 432 / 2e-145 AT4G07960 978 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Lus10007715 [exp] 432 / 4e-145 AT4G07960 1010 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Lus10038217 [exp] 419 / 6e-142 AT3G07330 821 / 0.0 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF13632 [poplar] [flax] Glyco_trans_2_3 Glycosyl transferase family group 2
Representative CDS sequence Show only first row Show all	>Potri.006G116900.2 pacid=42769164 polypeptide=Potri.006G116900.2.p locus=Potri.006G116900 ID=Potri.006G116900.2.v4.1 annot-version=v4.1 ATGGAGAGGCTAACCTCAACACAAATGATTCCTGATGCATTTCAAGGTGCTAGAGATGACGTAACAATGCAATTTGCTATGATTTGGGGCCAGATCAAAG CACCATTGATAGTTCCTCTACTAAGGCTCGCGGTTGCCATTTGTTTGATCATGTCTTTGATGTTGTTCATTGAAAGGGTTTACATGGGCATCGTTATCGT GTTAGTTAAGCTTTTTGGTCGGAAACCAGATAGGCGATACAAATGGGAGCCGATGAAAGATGATGTTGAGGCGGGGAACTCAACTTATCCCATGGTTCTG GTTCAAATCCCAATGTACAACGAACGAGAGGTTTATCAGCTTTCAATTGGAGCTGCATGTGGTCTCTCTTGGCCCTCAGACCGAATCATAATTCAAGTCC TCGATGATTCAACAGACCCAACAATCAAGGACATGGTGGAGCTGGAGTGTCAGAGATGGGCGAGCAAAGGGATAAACATAAAGTATGAGGTTAGAGATAG CAGAAATGGTTATAAATCAGGGGCATTGAAAGAAGGCATGAAACGAAGCTACGTGAAGAGTTGCGATTACGTTGCCATTTTTGACGCAGATTTCCAGCCT GAGCCTGATTTTTTACGGCGCACCATTCCCTTTCTAGTCCACAATCCAGAATTGGGTTTGGTCCAGACTCGTTGGAAATTCGTGAATGCTGATGAGTGCT TGATGACAAGAATGCAAGAAATGTCACTGGATTACCATTTTACAGTTGAACAGGAAGTGGGCTCCTCCACGTATGCCTTCTTCGGCTTCAATGGAACGGC AGGTGTATGGAGAATTGCTGCGCTTAATGAAGCTGGGGGGTGGAAGGACAGGACCACGGTGGAGGACATGGACCTAGCAGTCCGAGCTAGTCTCAAAGGC TGGGAATTCCTGTACCTTAGCAGTGTAAAGGTGAAAAATGAATTGCCCAGTACATTGAAAGCATATCGCTATCAACAGCACCGGTGGTCTTGTGGTCCTG CTAACCTTTTCAGAAAAATGTTAATGGAAATTATAACAAACAAGAAAGTGACATCGTGGAAGAAAGTGCACGTAATCTACAGCTTCTTCTTGGTTAGGAA GATCGTAGCTCACCTTGTTACATTTATCTTTTACTGTGTTGTGTTGCCGGCTACTGTTTTGGTGCCTGAAGTCGAGGTCCCTAAGTGGGGAGCTGTTTAT ATCCCTTCCATCATTACCATTCTAAATGCAGTTGGAACCCCAAGATCCCTCCACTTACTGGTTTTCTGGATCCTCTTTGAGAATGTCATGTCACTGCATC GCACTAAGGCTACCTTCATTGGCCTGCTAGAGGCTGGTAGAGTGAATGAGTGGATTGTCACTGAGAAACTAGGGGATGCTCTCAAGAGTAAAGCTAACAA AGCCGCCAAGAAACCCCGATTTAGATTTGGAGAAAGGCTCCATTTATTAGAGCTCGGGACTGGAGCTTACCTCTTCTTCTGCGGTTGCTATGATGTTGTC TTTGGGAAAAACCACTACTTCATATACCTTTATGCGCAAGCAATCGCCTTCTTTATCGTGGGGCTCGGCTGTGTCGGCACCATTGTTCCCCGCTCTTAG
AA sequence Show only first row Show all	>Potri.006G116900.2 pacid=42769164 polypeptide=Potri.006G116900.2.p locus=Potri.006G116900 ID=Potri.006G116900.2.v4.1 annot-version=v4.1 MERLTSTQMIPDAFQGARDDVTMQFAMIWGQIKAPLIVPLLRLAVAICLIMSLMLFIERVYMGIVIVLVKLFGRKPDRRYKWEPMKDDVEAGNSTYPMVL VQIPMYNEREVYQLSIGAACGLSWPSDRIIIQVLDDSTDPTIKDMVELECQRWASKGINIKYEVRDSRNGYKSGALKEGMKRSYVKSCDYVAIFDADFQP EPDFLRRTIPFLVHNPELGLVQTRWKFVNADECLMTRMQEMSLDYHFTVEQEVGSSTYAFFGFNGTAGVWRIAALNEAGGWKDRTTVEDMDLAVRASLKG WEFLYLSSVKVKNELPSTLKAYRYQQHRWSCGPANLFRKMLMEIITNKKVTSWKKVHVIYSFFLVRKIVAHLVTFIFYCVVLPATVLVPEVEVPKWGAVY IPSIITILNAVGTPRSLHLLVFWILFENVMSLHRTKATFIGLLEAGRVNEWIVTEKLGDALKSKANKAAKKPRFRFGERLHLLELGTGAYLFFCGCYDVV FGKNHYFIYLYAQAIAFFIVGLGCVGTIVPRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03760		ATCSLA9, RAT4, ...	RESISTANT TO AGROBACTERIUM TRA...		Potri.006G116900 [exp]	0	1
AT4G23820			Pectin lyase-like superfamily ...		Potri.003G139100 [exp]	1.00	0.9250
AT1G70230		AXY4, TBL27	ALTERED XYLOGLUCAN 4, TRICHOME...		Potri.008G146100 [exp]	2.64	0.9097
AT2G46210		AtSLD2	sphingoid LCB desaturase 2, Fa...		Potri.006G228200 [exp]	3.00	0.9208
AT4G31590		ATCSLC5, ATCSLC...	CELLULOSE-SYNTHASE LIKE C5, Ce...		Potri.006G270900 [exp]	3.00	0.9006	Pt-ATCSLC05.4
AT3G17640			Leucine-rich repeat (LRR) fami...		Potri.004G001000 [exp]	3.46	0.9140
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Potri.003G142000 [exp]	3.46	0.9194
AT4G38380			MATE efflux family protein (.1...		Potri.005G102800 [exp]	4.00	0.9017
AT4G31590		ATCSLC5, ATCSLC...	CELLULOSE-SYNTHASE LIKE C5, Ce...		Potri.018G009300 [exp]	4.00	0.9239
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Potri.004G084000 [exp]	6.16	0.8634
AT3G24240			Leucine-rich repeat receptor-l...		Potri.005G117700 [exp]	6.92	0.8754

Compare expression of checked genes

Potri.006G116900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.