Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04550 356 / 1e-115 Protein of unknown function (DUF668) (.1) AT3G23160 179 / 3e-49 Protein of unknown function (DUF668) (.1) AT5G51670 171 / 1e-46 Protein of unknown function (DUF668) (.1) AT1G34320 79 / 3e-15 Protein of unknown function (DUF668) (.1) AT1G30755 67 / 2e-11 Protein of unknown function (DUF668) (.1) AT5G08660 64 / 1e-10 Protein of unknown function (DUF668) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G233700 [exp] 223 / 6e-65 AT5G04550 677 / 0.0 Protein of unknown function (DUF668) (.1) Potri.008G026800 [exp] 217 / 9e-63 AT5G04550 677 / 0.0 Protein of unknown function (DUF668) (.1) Potri.010G074000 [exp] 191 / 2e-53 AT3G23160 657 / 0.0 Protein of unknown function (DUF668) (.1) Potri.012G129900 [exp] 186 / 3e-52 AT5G51670 466 / 6e-162 Protein of unknown function (DUF668) (.1) Potri.008G164700 [exp] 187 / 8e-52 AT3G23160 661 / 0.0 Protein of unknown function (DUF668) (.1) Potri.015G131800 [exp] 153 / 2e-40 AT5G51670 442 / 1e-152 Protein of unknown function (DUF668) (.1) Potri.013G115300 [exp] 78 / 6e-15 AT1G34320 889 / 0.0 Protein of unknown function (DUF668) (.1) Potri.019G085900 [exp] 78 / 8e-15 AT1G34320 908 / 0.0 Protein of unknown function (DUF668) (.1) Potri.002G021400 [exp] 74 / 2e-13 AT1G30755 568 / 0.0 Protein of unknown function (DUF668) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021210 [exp] 289 / 4e-90 AT3G23160 659 / 0.0 Protein of unknown function (DUF668) (.1) Lus10002840 [exp] 235 / 5e-70 AT5G04550 308 / 8e-98 Protein of unknown function (DUF668) (.1) Lus10021138 [exp] 234 / 1e-69 AT5G04550 300 / 2e-94 Protein of unknown function (DUF668) (.1) Lus10008987 [exp] 202 / 2e-57 AT5G04550 566 / 0.0 Protein of unknown function (DUF668) (.1) Lus10028839 [exp] 181 / 2e-50 AT5G04550 282 / 2e-89 Protein of unknown function (DUF668) (.1) Lus10022201 [exp] 182 / 3e-50 AT3G23160 657 / 0.0 Protein of unknown function (DUF668) (.1) Lus10031691 [exp] 147 / 4e-38 AT5G51670 452 / 2e-156 Protein of unknown function (DUF668) (.1) Lus10031110 [exp] 140 / 1e-35 AT5G51670 454 / 8e-157 Protein of unknown function (DUF668) (.1) Lus10017136 [exp] 76 / 3e-14 AT1G34320 570 / 0.0 Protein of unknown function (DUF668) (.1) Lus10018317 [exp] 76 / 3e-14 AT1G34320 559 / 0.0 Protein of unknown function (DUF668) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05003 [poplar] [flax] DUF668 Protein of unknown function (DUF668) PF11961 [poplar] [flax] DUF3475 Domain of unknown function (DUF3475)
Representative CDS sequence Show only first row Show all	>Potri.006G117000.3 pacid=42767611 polypeptide=Potri.006G117000.3.p locus=Potri.006G117000 ID=Potri.006G117000.3.v4.1 annot-version=v4.1 ATGGGACAGGCGATGGTAGCTGACTCGTGGTTTATTAATTGGAGGTGGAATTCACGAAAAGTCTCTGCAGAGACTGATAAGGAAGCAATTGGAGTATTGG CATATGAAGTTGCAGGCTTGATGTCCAAGGTCGTTAATTTATGGAACTATTTGAGTGATAGAGAGATCCATAGGTTGAGGGAAGAGATTGTCAACTCAGT TGGAGTTAAAAGGCTTGTAGCTGAGGATCATGATTGCCTGATGGATCTTGCACTAAATGAGATACTGGAGAATTTCAGGCTAATTGCAAGATCTGTGGCT CGGCTTGGGAGGAAGTGCAAAGACCCTCCTTTCCTCCTATTTGAACGTTTTGTTAATGACCCGGTTGGGAATAATCTTGAGTGGTTTGGGTGGCAATATA GATTAAAGAAGATGGAGAGGAAAGTTAAAAAAATGGAGAAATTTGTTGCAGTTACAATGCAATTGTCTCAGGAGCTGGAAGTTCTTGCAGAACTTGAACA AACTCTTAGGAGACTGCGGGCCAATGCTGACTTAGATCGTGTGAAATTGCTCCAATTTCAGAAGAAAGTAATGTGGCAGCGACAGGAAGTTAGAAATCTG CGGGAGATGTCACCATGGATTAGAACCTATGATTATGTTGTCCGTCTTTTGGCAAGATCACTTTTAACTATACTTGAGAGAATCAAGCATGTTTTTGAGA TCAATCAACTACCATCTGCTCAGGGAAACAGCAATTGCAAACAGAGGAATCCTGATTGTCTTCCTCAGACCCGTTCCTTTTCTGTTCTAATGCAATCTTC TATACTTCCTTCAGAGGATATTCTACATGGGTTCTCTTCAGTACCTACAGGAACATCAGGTTCGACTTCAGGACTGGCTGCTGAGAAGTATAAAATAAGC AAGCAACAGCTTCAACCTCATCATCAGTCATCCAGCCTACATGGAAAGCAGTCTCGCTTGAAAACAAAAGGATTGTCTCATGTTGGTTCTTTTAAGGAAT GCATGATGAGTGGAAGTGATTCTCCTATTTTGCTGACCTGCAATTCTGTTGTTGGTGGTTCTTTGAGGCTCACAAGTGACTATATGAAAAAAGTTGATCT AATGGAAAAATCAAATATGGAATCTCTTTCACGCAGCAACCGATTTTATTCTAAATTAGCTCTATTCAATTCAAAGCAGGGGTTGTTGAAAGCCCCCTCA TCCACTCTTGGTGCTGCTGCTTTAGCTCTCCATTATGCAAATTTGATCATATTAATTGATAAGGTAGCTTCATCGACTCATATGATTGACTTTGAAACAA GAGATGACCTGTATGGCATGTTACCCACAACTATAAGATCTGCTCTGAAGGCTAGGCTCAAGGCACATGCCAAATCTCTTGCTCCATTTGTATATGATGC TTCACTTGCAGCAGAGTGGAACCTGGCTTTGTCACAGATATTGGAATGGCTGTCTCCACTGGCTCATAACATGATAAGATGGCAGTCCAAGCAAAACTTT GAGAGGGCACATGAGGTTTCCAGCACAAATGTACTCCTGTTTCAGACCCTCCATTTTGCGGATCAAGCAAAGACTGAGGCTGCAATAACAGAACTTCTTG TTGGTCTGAACTACATCTGGCACGGAGAACATGATGAAAAAGCCTTGCCAGAGATTCCGGGCTGCAGAGCTAGTTCCTTTTATGAGCCAAAAAGGGATCA TCATGCATATTATATGGCACAGGATTGA
AA sequence Show only first row Show all	>Potri.006G117000.3 pacid=42767611 polypeptide=Potri.006G117000.3.p locus=Potri.006G117000 ID=Potri.006G117000.3.v4.1 annot-version=v4.1 MGQAMVADSWFINWRWNSRKVSAETDKEAIGVLAYEVAGLMSKVVNLWNYLSDREIHRLREEIVNSVGVKRLVAEDHDCLMDLALNEILENFRLIARSVA RLGRKCKDPPFLLFERFVNDPVGNNLEWFGWQYRLKKMERKVKKMEKFVAVTMQLSQELEVLAELEQTLRRLRANADLDRVKLLQFQKKVMWQRQEVRNL REMSPWIRTYDYVVRLLARSLLTILERIKHVFEINQLPSAQGNSNCKQRNPDCLPQTRSFSVLMQSSILPSEDILHGFSSVPTGTSGSTSGLAAEKYKIS KQQLQPHHQSSSLHGKQSRLKTKGLSHVGSFKECMMSGSDSPILLTCNSVVGGSLRLTSDYMKKVDLMEKSNMESLSRSNRFYSKLALFNSKQGLLKAPS STLGAAALALHYANLIILIDKVASSTHMIDFETRDDLYGMLPTTIRSALKARLKAHAKSLAPFVYDASLAAEWNLALSQILEWLSPLAHNMIRWQSKQNF ERAHEVSSTNVLLFQTLHFADQAKTEAAITELLVGLNYIWHGEHDEKALPEIPGCRASSFYEPKRDHHAYYMAQD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04550			Protein of unknown function (D...		Potri.006G117000 [exp]	0	1
AT1G74160			unknown protein		Potri.012G061900 [exp]	2.64	0.7195
AT1G35220			unknown protein		Potri.002G100800 [exp]	8.48	0.6687
AT5G53890		AtPSKR2	phytosylfokine-alpha receptor ...		Potri.001G398500 [exp]	13.49	0.6629
AT1G55200			Protein kinase protein with ad...		Potri.002G130300 [exp]	13.56	0.6794
AT5G42340		PUB15	Plant U-Box 15 (.1)		Potri.003G214100 [exp]	19.18	0.7059
AT5G14850			Alg9-like mannosyltransferase ...		Potri.018G098700 [exp]	25.65	0.6432
					Potri.019G023500 [exp]	32.24	0.6619
AT3G59770		AtSAC9, SAC9	ARABIDOPSIS THALIANA SUPPRESSO...		Potri.013G128500 [exp]	33.76	0.5919
AT4G16110	GARP	ARR2	response regulator 2 (.1)		Potri.010G105600 [exp]	35.65	0.6151
AT1G04140			Transducin family protein / WD...		Potri.002G254700 [exp]	41.02	0.6364

Compare expression of checked genes

Potri.006G117000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.