Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36570 806 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G68400 441 / 2e-146 leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G08680 355 / 1e-113 Leucine-rich repeat protein kinase family protein (.1.2) AT1G48480 354 / 5e-113 RKL1 receptor-like kinase 1 (.1) AT5G05160 346 / 5e-110 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT2G26730 346 / 1e-109 Leucine-rich repeat protein kinase family protein (.1) AT3G17840 344 / 3e-109 RLK902 receptor-like kinase 902 (.1) AT5G58300 338 / 9e-107 Leucine-rich repeat protein kinase family protein (.1.2) AT4G23740 328 / 4e-103 Leucine-rich repeat protein kinase family protein (.1) AT5G16590 326 / 1e-102 LRR1 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G121700 [exp] 442 / 1e-146 AT1G68400 760 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.019G062100 [exp] 381 / 8e-123 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.018G074300 [exp] 377 / 6e-122 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G131500 [exp] 375 / 2e-121 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G158800 [exp] 375 / 4e-121 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.003G136100 [exp] 374 / 4e-121 AT4G23740 769 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G095200 [exp] 372 / 3e-120 AT4G23740 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G035500 [exp] 370 / 4e-119 AT1G48480 731 / 0.0 receptor-like kinase 1 (.1) Potri.016G139200 [exp] 369 / 6e-119 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017178 [exp] 797 / 0 AT2G36570 872 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021131 [exp] 794 / 0 AT2G36570 851 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035138 [exp] 405 / 9e-132 AT1G68400 746 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10021673 [exp] 377 / 9e-122 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10035012 [exp] 374 / 9e-121 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10017996 [exp] 372 / 6e-120 AT1G48480 772 / 0.0 receptor-like kinase 1 (.1) Lus10019113 [exp] 369 / 1e-118 AT5G58300 848 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10014943 [exp] 363 / 1e-116 AT4G23740 634 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034446 [exp] 363 / 2e-116 AT5G58300 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10032351 [exp] 360 / 3e-115 AT4G23740 802 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.006G117200.1 pacid=42770499 polypeptide=Potri.006G117200.1.p locus=Potri.006G117200 ID=Potri.006G117200.1.v4.1 annot-version=v4.1 ATGAAGACAGTTTTTTTCCTCTATTTCACCATCTTTCTCTCTGTCCGCACCTCTCTTACTGTTACTGCTGCTCCTCCAAATGACACAAGTGCTCTTACTC TCTTCCGCCTCCAAACTGACACTCACGGCAACCTCCTCTCCAACTGGACTGGCCAGGACGCCTGTGGTTTCCCCACCTCGTGGCTTGGCGTCGGATGCTC CGCCTCCGGCCGTGTGGTTTCTCTCTCTTTGCCCTCTCTCTCACTTCGTGGGCCCATCACTTCACTTTCTCTCCTTGACCAGCTTCGCCTCCTAGACCTC CATAACAACCGCCTGAATGGCACCATTTCTCCACTCACAAACTGCACCCATCTCAAGCTTCTCTACCTTGCTGGCAATGACTTTTCAGGTGAAATTCCAC CCGAAATCTCCTCTCTCAAGCGTCTCCTTCGTCTTGACTTGTCCGACAACAACATACATGGCAAGATCCCCGGACAGTTGACCAATTTGACCAAGCTGTT AACACTCCGCTTACAAAACAATGAACTGTCCGGTCAAATCCCTGATTTTTCCACGTCATTTCCAGATTTAAAAGAGCTGAATTTGTCCAATAACGAGCTT TACGGACGGTTACCAGATAACCTACTGAAGAAATACAGCGACCGAAGCTTTTCTGGCAATGAAGGTCTGTGCGGGTCCAGCCCATTGCCAGTGTGTTCCT TCACAGGCAATGAACAACCAGTCGATTCAGATGAAACAGTACCATCTAATCCTAGCTCTATGCCTCAAACCCCACTCCTTGGCAAAGATAAATCTCACTT ACATAAAGGACTAAGCCCTGGTGCTATAGTGGCAATTGTGATGGCAAATTGTGTAACATTACTGGTTGTGATTTCTTTTTTAGTTGCGTATTACTGTGGT AGAGATAGAAGTAGTAGTGCAAGTTCAAAAGCGGGTAGTGAGAGTGGAAAGAGGAGGAAGAGTGGGAGTAGTTATGGGAGTGAAAAGAGAGTGTATGCAA ACGAGGGTGGAGATAGTGATGGGACTAATGCTACAGACAGGAGTAAGCTAGTGTTCTTTGACAGGAAGAAGCAGTTTGAACTTGAGGACCTATTGCGTGC GTCGGCAGAGATGCTTGGGAAAGGGAGCTTGGGGACTGTATATAAGGCGGTGCTCGATGATGGTTGTACAGTGGCTGTCAAGAGGTTGAAGGATGCAAAC CCTTGTGCTAGGAAGGAGTTTGAACAGTATATGGATGTGATTGGGAAACTTAAGCACCCAAATATTGTGAGACTTGCAGCTTACTATTATGCCAAGGAAG AGAAGCTTCTCGTTTATGATTATCTTCCTAATGGGAGTCTCTACTCACTTCTTCATGGGAATCGAGGTCCAGGGAGGATTCCTCTAGATTGGACTACAAG AATCAGCTTGGTGTTGGGAGCGGCTAGAGGATTGGCAAAGATACATGAAGAATATAGTGCATCAAAAATCCCCCATGGGAACGTGAAATCTTCCAATGTG CTCCTTGACAAGAATGGTGTTGCTTGCATTTCTGATTTCGGGTTGTCTCTACTTTTGAACCCAGTCCATGCCATTGCAAGACTGGGAGGATACAGGGCTC CAGAGCAAGCAGAAATCAAGAGGCTCTCTCAGAAGGCGGATGTGTATAGTTTTGGGGTCTTGTTGTTGGAAGTTCTTACAGGCAGAACTCCTTCGGAGTA CCCCTCGCCAACACGCCCACGCATTGAAGACGAGGAGCAAGCAGTAGATCTTCCTAAGTGGGTGAGATCAGTCGTTAAGGAAGAGTGGACATCAGAAGTA TTTGATCAAGAACTCTTGAGGTATAAGAACATTGAAGAAGAACTTGTATCAATGCTTCACGTGGGGTTGGCTTGTGTGTTTCCACAACCTGAAAAGAGGC CTACAATGGCAGAAGTGGCTAAGATGATTGAAGACATTAGGGTGGAGCAGTCTCCTCTGGGGGAGGACTACGATGAATCTCGCAATTCGCTGTCACCTTC CCTCGCAACCACTGAAGATGGGATGGCGGGGTATTGA
AA sequence Show only first row Show all	>Potri.006G117200.1 pacid=42770499 polypeptide=Potri.006G117200.1.p locus=Potri.006G117200 ID=Potri.006G117200.1.v4.1 annot-version=v4.1 MKTVFFLYFTIFLSVRTSLTVTAAPPNDTSALTLFRLQTDTHGNLLSNWTGQDACGFPTSWLGVGCSASGRVVSLSLPSLSLRGPITSLSLLDQLRLLDL HNNRLNGTISPLTNCTHLKLLYLAGNDFSGEIPPEISSLKRLLRLDLSDNNIHGKIPGQLTNLTKLLTLRLQNNELSGQIPDFSTSFPDLKELNLSNNEL YGRLPDNLLKKYSDRSFSGNEGLCGSSPLPVCSFTGNEQPVDSDETVPSNPSSMPQTPLLGKDKSHLHKGLSPGAIVAIVMANCVTLLVVISFLVAYYCG RDRSSSASSKAGSESGKRRKSGSSYGSEKRVYANEGGDSDGTNATDRSKLVFFDRKKQFELEDLLRASAEMLGKGSLGTVYKAVLDDGCTVAVKRLKDAN PCARKEFEQYMDVIGKLKHPNIVRLAAYYYAKEEKLLVYDYLPNGSLYSLLHGNRGPGRIPLDWTTRISLVLGAARGLAKIHEEYSASKIPHGNVKSSNV LLDKNGVACISDFGLSLLLNPVHAIARLGGYRAPEQAEIKRLSQKADVYSFGVLLLEVLTGRTPSEYPSPTRPRIEDEEQAVDLPKWVRSVVKEEWTSEV FDQELLRYKNIEEELVSMLHVGLACVFPQPEKRPTMAEVAKMIEDIRVEQSPLGEDYDESRNSLSPSLATTEDGMAGY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36570			Leucine-rich repeat protein ki...		Potri.006G117200 [exp]	0	1
AT2G40480			Plant protein of unknown funct...		Potri.019G049201 [exp]	1.41	0.9557
AT3G54260		TBL36	TRICHOME BIREFRINGENCE-LIKE 36...		Potri.008G020900 [exp]	2.44	0.9481
AT5G66920		SKS17	SKU5 similar 17 (.1)		Potri.007G038300 [exp]	2.82	0.9556
AT1G64800			DNA binding;sequence-specific ...		Potri.016G001800 [exp]	2.82	0.9449
AT1G28400			unknown protein		Potri.011G057500 [exp]	3.00	0.9529
AT3G60550		CYCP3;2	cyclin p3;2 (.1)		Potri.014G066400 [exp]	3.60	0.9400
AT3G56810			unknown protein		Potri.006G026600 [exp]	3.74	0.9479
AT3G44610			Protein kinase superfamily pro...		Potri.010G236200 [exp]	4.89	0.9515
AT3G25130			unknown protein		Potri.002G246400 [exp]	5.47	0.9425
AT1G46480	HD	WOX4	WUSCHEL related homeobox 4 (.1...		Potri.014G025300 [exp]	6.00	0.9329

Compare expression of checked genes

Potri.006G117200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.