Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52990 988 / 0 Pyruvate kinase family protein (.1.2) AT2G36580 976 / 0 Pyruvate kinase family protein (.1) AT5G63680 392 / 9e-132 Pyruvate kinase family protein (.1) AT5G08570 392 / 2e-131 Pyruvate kinase family protein (.1) AT5G56350 384 / 1e-128 Pyruvate kinase family protein (.1) AT4G26390 371 / 1e-123 Pyruvate kinase family protein (.1) AT3G04050 359 / 1e-118 Pyruvate kinase family protein (.1) AT3G55650 351 / 2e-115 Pyruvate kinase family protein (.1) AT3G25960 350 / 2e-115 Pyruvate kinase family protein (.1) AT3G55810 314 / 2e-101 Pyruvate kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G233200 [exp] 910 / 0 AT3G52990 901 / 0.0 Pyruvate kinase family protein (.1.2) Potri.008G027100 [exp] 904 / 0 AT3G52990 901 / 0.0 Pyruvate kinase family protein (.1.2) Potri.003G223100 [exp] 399 / 2e-134 AT5G56350 915 / 0.0 Pyruvate kinase family protein (.1) Potri.001G001600 [exp] 398 / 6e-134 AT5G56350 913 / 0.0 Pyruvate kinase family protein (.1) Potri.008G002500 [exp] 389 / 7e-130 AT5G08570 933 / 0.0 Pyruvate kinase family protein (.1) Potri.010G254900 [exp] 385 / 1e-128 AT5G08570 927 / 0.0 Pyruvate kinase family protein (.1) Potri.013G060400 [exp] 377 / 2e-125 AT5G56350 835 / 0.0 Pyruvate kinase family protein (.1) Potri.019G032600 [exp] 372 / 1e-123 AT5G56350 816 / 0.0 Pyruvate kinase family protein (.1) Potri.008G159700 [exp] 176 / 3e-48 AT3G22960 945 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008644 [exp] 994 / 0 AT3G52990 967 / 0.0 Pyruvate kinase family protein (.1.2) Lus10035581 [exp] 966 / 0 AT3G52990 941 / 0.0 Pyruvate kinase family protein (.1.2) Lus10017364 [exp] 390 / 7e-131 AT5G08570 907 / 0.0 Pyruvate kinase family protein (.1) Lus10041003 [exp] 390 / 8e-131 AT5G08570 928 / 0.0 Pyruvate kinase family protein (.1) Lus10013396 [exp] 388 / 5e-130 AT5G56350 931 / 0.0 Pyruvate kinase family protein (.1) Lus10010329 [exp] 385 / 1e-128 AT5G56350 930 / 0.0 Pyruvate kinase family protein (.1) Lus10010159 [exp] 377 / 9e-126 AT5G08570 896 / 0.0 Pyruvate kinase family protein (.1) Lus10003439 [exp] 357 / 2e-117 AT5G56350 759 / 0.0 Pyruvate kinase family protein (.1) Lus10026875 [exp] 345 / 6e-113 AT5G56350 759 / 0.0 Pyruvate kinase family protein (.1) Lus10013449 [exp] 254 / 1e-80 AT5G08570 543 / 0.0 Pyruvate kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0151 [poplar] [flax] PK_TIM PF00224 [poplar] [flax] PK Pyruvate kinase, barrel domain CL0151 [poplar] [flax] PF02887 [poplar] [flax] PK_C Pyruvate kinase, alpha/beta domain
Representative CDS sequence Show only first row Show all	>Potri.006G117400.1 pacid=42768907 polypeptide=Potri.006G117400.1.p locus=Potri.006G117400 ID=Potri.006G117400.1.v4.1 annot-version=v4.1 ATGCATTCAAATCACTTGCTTTTGGAGGAGCCTATAAGGATGGCTTCAATTCTGGAGCCTTCAAAATCTAGTTTCTTTCCAGCAATGACGAAGATTGTAG GCACACTAGGTCCAAAATCTCGATCTGTTGAGGTTATTTCTGGTTGCCTCAAGGCTGGGATGTCCGTGGCTAGGTTTGATTTTTCATGGGGTAACCCTGA GTATCACCAGGGGACTTTGGAGAATTTGAAGGCTGCTGTCAAGACCACCAAGAAGCTCTGTGCTGTCATGCTCGACACGGTGGGACCTGAGTTGCAGGTT GTTAATAAAAGTGGCAACCCCATTTCTCTTCTGGCAGATGGTTTTGTTATTCTGACACCAGATCAAGAACAGGAAGCTTCATCTAAAGTTCTCCCCATCA ATTTTGATGGACTATCTAAGGCAGTGAAGCATGGAGACACCATTTTTGTCGGCCAATACCTCTTCACTGGAAGTGAAACTACTTCTGTATGGCTGGAGGT TTCTGAGGTGAAGGGCAATGATGTGGTCTGTGTTATAAAGAACTCAGCAACTTTGGCTGGATCTTTATTCACTTTGCATGCCTCCCAAATTCGTATTGAA CTTCCTACTCTTTCAGATAAAGATAAGGAGGTTATAAGTACTTGGGGAGTTCAAAACAAAATTGACTTCCTCTCATTGTCGTATACCCGGCATGCAGAAG ATGTACGCAATGCCCGTGAGTACCTATCTAAGCTGGGTGATCTATATCAGACTCAAATTTTTGCCAAGATTGAGAATATAGAGGGTTTAACTCATTTTGA TGAGATATTACAAGAAGCTGATGGTATTATCCTTTCCAGAGGAAATTTGGGCATAGATCTCCCACCAGAGAAGGTGTTCTTATTTCAGAAGGCTGCCCTT TACAAGTGCAACATGGCTGGCAAGCCTGCAGTGGTCACTCGTGTTGTGGATAGTATGACTGACAACTTAAGACCAACTCGTGCAGAAGCAACTGATGTTG CTAATGCTGTGTTGGATGGAAGTGATGCGATTCTTCTTGGTGCTGAGACTCTTCGTGGGCTGTACCCTATAGAAACCATTTCCACTGTTGGTAAAATCTG TGCTGAGGCAGAGAAGGTTTTCAATCAAGACTTGTATTTCAAGAAAACTGTCAAATATGTTGGAGAGCCAATGACCCACCTTGAATCCATTGCTTCATCT GCGGTACGAGCAGCCATCAAGGTGAAGTCATCCGTCATTATATGCTTCACTTCTTCAGGAAGGGCTGCAAGATTGATTGCCAAGTATAGGCCAACAATGC CAGTTCTGTCTGTTGTCATCCCTCGACTTAAGACAAATCAATTGAAATGGAGCTTTAGTGGGGCCTTTGAGGCAAGGCAATCGCTCATTGTCAGAGGTCT CTTTCCTATGCTTGCTGATCCGAGACATCCTGCGGAATCTACAAGTGCTACGAATGAGTCCATTCTAAAGGTTGCTCTTGATCACGGAAAAGCTTCCGGA GTAATAAAGTCGCATGACAGGGTAGTTATTTGCCAAAAAGTTGGGGATGCATCTGTGGTCAAGATTATTGAGCTTGAGGATTAA
AA sequence Show only first row Show all	>Potri.006G117400.1 pacid=42768907 polypeptide=Potri.006G117400.1.p locus=Potri.006G117400 ID=Potri.006G117400.1.v4.1 annot-version=v4.1 MHSNHLLLEEPIRMASILEPSKSSFFPAMTKIVGTLGPKSRSVEVISGCLKAGMSVARFDFSWGNPEYHQGTLENLKAAVKTTKKLCAVMLDTVGPELQV VNKSGNPISLLADGFVILTPDQEQEASSKVLPINFDGLSKAVKHGDTIFVGQYLFTGSETTSVWLEVSEVKGNDVVCVIKNSATLAGSLFTLHASQIRIE LPTLSDKDKEVISTWGVQNKIDFLSLSYTRHAEDVRNAREYLSKLGDLYQTQIFAKIENIEGLTHFDEILQEADGIILSRGNLGIDLPPEKVFLFQKAAL YKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPIETISTVGKICAEAEKVFNQDLYFKKTVKYVGEPMTHLESIASS AVRAAIKVKSSVIICFTSSGRAARLIAKYRPTMPVLSVVIPRLKTNQLKWSFSGAFEARQSLIVRGLFPMLADPRHPAESTSATNESILKVALDHGKASG VIKSHDRVVICQKVGDASVVKIIELED

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G52990			Pyruvate kinase family protein...		Potri.006G117400 [exp]	0	1
AT2G44100		AT-GDI1, ATGDI1	guanosine nucleotide diphospha...		Potri.017G001200 [exp]	1.00	0.8822	Pt-GDI.1
AT1G13560		AAPT1, ATAAPT1	aminoalcoholphosphotransferase...		Potri.010G133800 [exp]	4.00	0.7458	Pt-AAPT1.1
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Potri.013G005600 [exp]	5.09	0.8311
AT5G56350			Pyruvate kinase family protein...		Potri.001G001600 [exp]	8.12	0.7352
AT1G66680		AR401	S-adenosyl-L-methionine-depend...		Potri.015G062400 [exp]	8.83	0.7516	Pt-AR401.1
AT3G17430			Nucleotide-sugar transporter f...		Potri.010G001700 [exp]	17.74	0.7970
AT4G27720			Major facilitator superfamily ...		Potri.012G020500 [exp]	18.24	0.7628
AT5G47770		FPS1	farnesyl diphosphate synthase ...		Potri.006G003400 [exp]	25.39	0.7461	Pt-FPS1.2
AT5G19780		TUA5	tubulin alpha-5 (.1)		Potri.001G004600 [exp]	30.29	0.7752
AT4G38630		ATMCB1, MBP1, A...	MULTIUBIQUITIN-CHAIN-BINDING P...		Potri.009G133000 [exp]	34.00	0.7147

Compare expression of checked genes

Potri.006G117400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.