Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10040 248 / 3e-77 Trihelix sequence-specific DNA binding transcription factors (.1) AT1G21200 192 / 7e-56 Trihelix sequence-specific DNA binding transcription factors (.1) AT1G76870 181 / 3e-52 Trihelix unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G096300 [exp] 595 / 0 AT3G10040 249 / 7e-78 sequence-specific DNA binding transcription factors (.1) Potri.002G068700 [exp] 205 / 1e-60 AT1G21200 445 / 1e-154 sequence-specific DNA binding transcription factors (.1) Potri.005G191700 [exp] 202 / 2e-59 AT1G21200 444 / 3e-154 sequence-specific DNA binding transcription factors (.1) Potri.003G204700 [exp] 196 / 7e-57 AT1G21200 212 / 1e-63 sequence-specific DNA binding transcription factors (.1) Potri.001G019200 [exp] 196 / 8e-57 AT1G21200 212 / 1e-63 sequence-specific DNA binding transcription factors (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008643 [exp] 392 / 4e-132 AT3G10040 325 / 5e-107 sequence-specific DNA binding transcription factors (.1) Lus10035582 [exp] 387 / 4e-130 AT3G10040 326 / 2e-107 sequence-specific DNA binding transcription factors (.1) Lus10029777 [exp] 204 / 2e-60 AT1G21200 503 / 9e-178 sequence-specific DNA binding transcription factors (.1) Lus10042805 [exp] 201 / 4e-59 AT1G21200 496 / 8e-175 sequence-specific DNA binding transcription factors (.1) Lus10018886 [exp] 190 / 1e-55 AT1G21200 335 / 2e-113 sequence-specific DNA binding transcription factors (.1) Lus10028581 [exp] 187 / 1e-54 AT1G21200 369 / 8e-126 sequence-specific DNA binding transcription factors (.1) Lus10002481 [exp] 38 / 0.0007 AT2G38250 91 / 4e-24 Homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF13837 [poplar] [flax] Myb_DNA-bind_4 Myb/SANT-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G117500.1 pacid=42769764 polypeptide=Potri.006G117500.1.p locus=Potri.006G117500 ID=Potri.006G117500.1.v4.1 annot-version=v4.1 ATGGAACACAATGATTTAGGTGGTGGGATATTTCCAGGCATGGGATCAGGAATACTAGGACTAGAATTGCCACTACACCAACAACAAAACCCACAAAACC CTCACCACTTGCAGCATCCCCAGATTGTAGCTTATGCCCACCATGAATCTGATCACCATCAACACTCCCAGCAATCTGCCAAACATGCCTATCCTTTTGC CTCCACAAAGCCTAAACAATTATCACCATTGAGTAATGAAGATGAGCCTTCTTTCACTGGAGATGACAGCACCACTGATGGAAACAGGAAAATTTCTCCA TGGCAAAGAATGAAGTGGACTGATAATATGGTTAGGCTACTTATAATGGCAGTTTTTTACATTGGTGATGAGGTTGGGTCTGAAGTGAGTGATCCTATAG GCAAGAAAAAGCCCGGTGGCCTGGCACAGAAGAAAGGGAAATGGAAATCAGTTTCTCGGGCAATGATGGAGAAAGGGTTTTATGTGTCTCCACAACAATG TGAGGATAAATTCAATGACTTGAACAAGAGGTATAAGAGGGTTAATGATATCCTTGGAAAGGGGACTGCCTGCAGGGTTGTGGAGAATCAAAGCTTGCTT GATACTATGGATTTGTCACCGAAAATGAAGGATGAAGTGAGAAAATTGCTCAATTCCAAGCACTTGTTTTTCAGAGAAATGTGTGCTTATCATAATAGCT GTGGCCATGCTGGGGTTGCCTCTGGTATTAATAACTCACCAGAGATGGCTACAGACCCATCTCATGCTCAGCACCAACAAGCAACACAACAGCAACAGCA ATACCAAAGGTGTTCTCATTCAACTGAAAACGCTCAAGTTGTAACCAATTCGAGGACCGAAACAGAAGGGTCAAAAATGGCAAAATTGGCAAGAAATGAA GAGGATGACCACGACGAAAGCGAGGAAGATGAAGATGATTACGTGGAGGATGAGGAGGAGGAGGATGATGATGATGAAAGAGACGATGATGAAGAGGATT ATGAAGAGAATGAGGATGAGGCAGTAGAAGGCAATTCAAGGCATCAAAACGGGCATGGGCATGGAGATGAAGATGACCATGACGAGAAATCATCACGGAA GAGGCCAAGAAAGGAAGTGTTTTCAGCAACATCATCTCTGATGCAGCAATTGAATGGGGAAATAATGAACGTGCTCCGAGATGGAGCAAAGAGTTCATGG GAGAAGAATCAGTGGATGAAGCTGAAGTTGATGCAATTAGAGGAGCAGCAAGTGAACTACCAATGCCAGGCATTTGAGCTTGAAAAGCAAAGGTTGAAGT GGGTGAGATTCAGTAGCAAGAAAGAGAGGGAAATGGAGAGGGCTAAGCTAGAGAATGAGAGAAAAAGGCTTGAAAATGAGAGAATGGTACTGACTGTAAG GAAGAAAGAGCTTGAGTTGCTTGATACTACACATCAACAGCAACAACTGCCTTCAAACAAGCGGAGTGATCCTTCTTCCATTGCTGGATGA
AA sequence Show only first row Show all	>Potri.006G117500.1 pacid=42769764 polypeptide=Potri.006G117500.1.p locus=Potri.006G117500 ID=Potri.006G117500.1.v4.1 annot-version=v4.1 MEHNDLGGGIFPGMGSGILGLELPLHQQQNPQNPHHLQHPQIVAYAHHESDHHQHSQQSAKHAYPFASTKPKQLSPLSNEDEPSFTGDDSTTDGNRKISP WQRMKWTDNMVRLLIMAVFYIGDEVGSEVSDPIGKKKPGGLAQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGTACRVVENQSLL DTMDLSPKMKDEVRKLLNSKHLFFREMCAYHNSCGHAGVASGINNSPEMATDPSHAQHQQATQQQQQYQRCSHSTENAQVVTNSRTETEGSKMAKLARNE EDDHDESEEDEDDYVEDEEEEDDDDERDDDEEDYEENEDEAVEGNSRHQNGHGHGDEDDHDEKSSRKRPRKEVFSATSSLMQQLNGEIMNVLRDGAKSSW EKNQWMKLKLMQLEEQQVNYQCQAFELEKQRLKWVRFSSKKEREMERAKLENERKRLENERMVLTVRKKELELLDTTHQQQQLPSNKRSDPSSIAG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10040	Trihelix		sequence-specific DNA binding ...		Potri.006G117500 [exp]	0	1
AT4G10270			Wound-responsive family protei...		Potri.019G117500 [exp]	1.73	0.9587
AT4G10265			Wound-responsive family protei...		Potri.019G117566 [exp]	3.46	0.9294
					Potri.005G089900 [exp]	5.47	0.9187
AT4G10270			Wound-responsive family protei...		Potri.019G117402 [exp]	6.00	0.9123
AT3G02550	AS2	LBD41	LOB domain-containing protein ...		Potri.017G114500 [exp]	7.00	0.9000	LBD41.3
AT4G10265			Wound-responsive family protei...		Potri.019G117700 [exp]	8.48	0.8984
AT5G15120			Protein of unknown function (D...		Potri.013G064200 [exp]	9.79	0.8726
AT4G10270			Wound-responsive family protei...		Potri.019G117632 [exp]	9.94	0.8827
					Potri.001G137100 [exp]	10.81	0.8466
AT3G02550	AS2	LBD41	LOB domain-containing protein ...		Potri.004G100100 [exp]	12.12	0.7936	Pt-LBD41.1

Compare expression of checked genes

Potri.006G117500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.