Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53000 486 / 2e-175 ATPP2-A15 phloem protein 2-A15 (.1) AT1G12710 314 / 2e-107 ATPP2-A12 phloem protein 2-A12 (.1) AT3G61060 312 / 8e-107 ATPP2-A13 phloem protein 2-A13 (.1.2) AT1G63090 286 / 1e-96 ATPP2-A11 phloem protein 2-A11 (.1) AT5G52120 281 / 1e-94 ATPP2-A14 phloem protein 2-A14 (.1) AT2G02360 118 / 1e-31 ATPP2-B10 phloem protein 2-B10 (.1) AT2G02240 108 / 2e-27 MEE66 maternal effect embryo arrest 66, F-box family protein (.1) AT2G02250 108 / 2e-27 ATPP2-B2 phloem protein 2-B2 (.1) AT2G02340 106 / 8e-27 ATPP2-B8 phloem protein 2-B8 (.1) AT1G09155 101 / 4e-25 ATPP2-B15 phloem protein 2-B15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G075800 [exp] 338 / 3e-117 AT3G61060 397 / 4e-140 phloem protein 2-A13 (.1.2) Potri.001G109800 [exp] 326 / 5e-112 AT1G12710 408 / 1e-144 phloem protein 2-A12 (.1) Potri.003G121900 [exp] 324 / 2e-111 AT1G12710 401 / 9e-142 phloem protein 2-A12 (.1) Potri.015G138600 [exp] 314 / 1e-107 AT5G52120 356 / 3e-124 phloem protein 2-A14 (.1) Potri.012G136200 [exp] 310 / 5e-106 AT5G52120 353 / 3e-123 phloem protein 2-A14 (.1) Potri.001G050100 [exp] 107 / 3e-27 AT2G02360 219 / 5e-71 phloem protein 2-B10 (.1) Potri.018G016100 [exp] 107 / 5e-27 AT2G02250 217 / 2e-69 phloem protein 2-B2 (.1) Potri.005G022000 [exp] 106 / 1e-26 AT1G09155 290 / 4e-98 phloem protein 2-B15 (.1) Potri.013G012600 [exp] 105 / 2e-26 AT1G09155 281 / 1e-94 phloem protein 2-B15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008642 [exp] 508 / 0 AT3G53000 470 / 6e-169 phloem protein 2-A15 (.1) Lus10029593 [exp] 293 / 3e-99 AT1G12710 398 / 2e-140 phloem protein 2-A12 (.1) Lus10027423 [exp] 289 / 2e-97 AT3G61060 320 / 1e-109 phloem protein 2-A13 (.1.2) Lus10024494 [exp] 289 / 3e-97 AT1G12710 377 / 6e-132 phloem protein 2-A12 (.1) Lus10005769 [exp] 283 / 4e-95 AT3G61060 308 / 3e-105 phloem protein 2-A13 (.1.2) Lus10020674 [exp] 108 / 1e-27 AT1G09155 266 / 7e-89 phloem protein 2-B15 (.1) Lus10029872 [exp] 108 / 1e-27 AT1G09155 272 / 3e-91 phloem protein 2-B15 (.1) Lus10023207 [exp] 104 / 4e-26 AT2G02240 213 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1) Lus10008898 [exp] 100 / 1e-24 AT5G24560 212 / 3e-68 phloem protein 2-B12 (.1) Lus10020673 [exp] 100 / 2e-24 AT1G09155 272 / 2e-91 phloem protein 2-B15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14299 [poplar] [flax] PP2 Phloem protein 2
Representative CDS sequence Show only first row Show all	>Potri.006G117600.1 pacid=42767941 polypeptide=Potri.006G117600.1.p locus=Potri.006G117600 ID=Potri.006G117600.1.v4.1 annot-version=v4.1 ATGGGCGCCTCGTTATCGAACCTGACGGAGGGAGCGGGCATGGGTGGTCCTGGGCTGGGGGACATACCGGAGAGCTGCGTGGCTTGTGTTTTCATGTATT TGACGCCTCCTGAGATTTGCAATCTGGCTCGATTGAACCGTGCTTTTCGAGGAGCCGCTTCTTCCGATTCCGTTTGGGAAAACAAGTTGCCTTCTAATTA TCAGGATCTGCTCCATATCCTTCCTCCTGATAGATACCTCAATTTCTCCAAAAAAGACATCTTTGCCCTCCTCTCTCGCCCTCTCCCTTTCGATGACGGC AATAAGGAGGTGTGGCTTGATAGAGTGACGGGAAGGGTTTGTATGTCGATATCGGCCAAAGGGATGTCAATTACGGGAATTGAAGACCGCAGATATTGGA CTTGGGTTCCTACTGAAGAATCAAGATTCCATGTGGTGGCCTATTTGCAACAAATATGGTGGTTTGAAGTGGATGGAGTTGTAAAGTTCCCTTTCCCTGC TGATATCTATACTCTATACTTCAGGCTTCACCTTGGAAGGTTTTCCAAACGACTGGGACGCCGTGTCTGCAATTTTGACCACACTCATGGTTGGGATATA AAGCCAGTACGGTTTGAGCTGTCTACCTCTGATGGCCAGCAAGCATCATGTGAGTTCTGTTTAGACGAGACTGAACAAGATGAAGCAAATGGCAACCAGA AGCGTGGATGCTGGATAGATTACAAGGTAGGTGAATTTATTGTGACAGGCTCAGAACCTGCTACTGAGGTCAAATTTTCCATGAAACAGATTGATTGCAC ACATTCCAAAGGTGGGCTTTGTGTAGATTCTGTATTTATTATCCCCAGTGATCTGAAAGACCGCAAAAGAAGAGGGATTTTGAAGTAG
AA sequence Show only first row Show all	>Potri.006G117600.1 pacid=42767941 polypeptide=Potri.006G117600.1.p locus=Potri.006G117600 ID=Potri.006G117600.1.v4.1 annot-version=v4.1 MGASLSNLTEGAGMGGPGLGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSNYQDLLHILPPDRYLNFSKKDIFALLSRPLPFDDG NKEVWLDRVTGRVCMSISAKGMSITGIEDRRYWTWVPTEESRFHVVAYLQQIWWFEVDGVVKFPFPADIYTLYFRLHLGRFSKRLGRRVCNFDHTHGWDI KPVRFELSTSDGQQASCEFCLDETEQDEANGNQKRGCWIDYKVGEFIVTGSEPATEVKFSMKQIDCTHSKGGLCVDSVFIIPSDLKDRKRRGILK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53000		ATPP2-A15	phloem protein 2-A15 (.1)		Potri.006G117600 [exp]	0	1
AT3G24160		PMP	putative type 1 membrane prote...		Potri.001G049800 [exp]	2.44	0.8369	Pt-PMP.1
AT5G09920		NRPB4, ATRPB15....	RNA polymerase II, Rpb4, core ...		Potri.005G084900 [exp]	6.70	0.7755
AT3G09735			S1FA-like DNA-binding protein ...		Potri.006G130200 [exp]	6.78	0.8138	S1FA3.1
AT1G72175			RING/U-box protein with domain...		Potri.013G105400 [exp]	8.83	0.7640
AT1G73820			Ssu72-like family protein (.1)		Potri.015G036600 [exp]	10.58	0.7199
AT3G05100			S-adenosyl-L-methionine-depend...		Potri.005G046300 [exp]	12.00	0.7531
AT3G19184	B3		AP2/B3-like transcriptional fa...		Potri.007G042500 [exp]	17.74	0.7019
AT5G17630			Nucleotide/sugar transporter f...		Potri.013G071900 [exp]	17.74	0.7560
AT4G20410		GAMMA-SNAP, GSN...	gamma-soluble NSF attachment p...		Potri.011G155200 [exp]	26.45	0.7828	Pt-GSNAP.1
AT2G15570		TRX-M3, GAT1, A...	THIOREDOXIN-M3, GFP ARRESTED T...		Potri.009G100700 [exp]	26.72	0.7636	ATHM3.1,PtrTrxm5

Compare expression of checked genes

Potri.006G117600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.