Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03790 181 / 4e-57 HD LMI1, ATHB51 LATE MERISTEM IDENTITY1, homeobox 51 (.1) AT2G36610 141 / 4e-42 HD ATHB22 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 22, homeobox protein 22 (.1) AT1G69780 115 / 5e-31 HD ATHB13 Homeobox-leucine zipper protein family (.1) AT3G01220 113 / 3e-30 HD ATHB20 homeobox protein 20 (.1) AT4G40060 112 / 7e-30 HD ATHB16 ,ATHB-16 homeobox protein 16 (.1) AT5G15150 111 / 4e-29 HD ATHB3, HAT7, ATHB-3 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) AT5G65310 110 / 5e-29 HD ATHB-5, ATHB5 homeobox protein 5 (.1.2) AT2G22430 108 / 3e-28 HD ATHB6 homeobox protein 6 (.1) AT3G01470 107 / 6e-28 HD HD-ZIP-1, HAT5, ATHB1, ATHB-1 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) AT1G26960 106 / 1e-27 HD ATHB23 homeobox protein 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G071900 [exp] 120 / 2e-32 AT2G22430 248 / 6e-81 homeobox protein 6 (.1) Potri.007G097100 [exp] 117 / 3e-31 AT2G22430 250 / 9e-82 homeobox protein 6 (.1) Potri.010G093400 [exp] 113 / 6e-30 AT1G69780 308 / 5e-105 Homeobox-leucine zipper protein family (.1) Potri.008G148200 [exp] 111 / 2e-29 AT1G69780 333 / 6e-115 Homeobox-leucine zipper protein family (.1) Potri.015G065400 [exp] 111 / 4e-29 AT3G01470 136 / 4e-38 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.012G070900 [exp] 108 / 5e-28 AT3G01470 145 / 1e-41 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.008G194400 [exp] 107 / 7e-28 AT5G15150 122 / 1e-32 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) Potri.017G081700 [exp] 107 / 7e-28 AT5G15150 248 / 5e-81 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) Potri.005G161500 [exp] 101 / 8e-26 AT4G40060 187 / 4e-58 homeobox protein 16 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008641 [exp] 219 / 1e-71 AT5G03790 152 / 4e-45 LATE MERISTEM IDENTITY1, homeobox 51 (.1) Lus10035583 [exp] 195 / 2e-62 AT5G03790 146 / 2e-43 LATE MERISTEM IDENTITY1, homeobox 51 (.1) Lus10012845 [exp] 112 / 5e-30 AT1G69780 280 / 1e-94 Homeobox-leucine zipper protein family (.1) Lus10030493 [exp] 112 / 6e-30 AT1G69780 288 / 1e-97 Homeobox-leucine zipper protein family (.1) Lus10042180 [exp] 109 / 2e-28 AT3G01470 159 / 6e-47 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10037200 [exp] 108 / 5e-28 AT1G69780 319 / 2e-109 Homeobox-leucine zipper protein family (.1) Lus10036730 [exp] 107 / 8e-28 AT1G69780 325 / 9e-112 Homeobox-leucine zipper protein family (.1) Lus10023159 [exp] 106 / 3e-27 AT4G40060 220 / 1e-70 homeobox protein 16 (.1) Lus10022225 [exp] 105 / 3e-27 AT3G01470 270 / 2e-90 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10008795 [exp] 105 / 5e-27 AT3G01470 261 / 3e-87 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00046 [poplar] [flax] Homeodomain Homeodomain CL0123 [poplar] [flax] PF02183 [poplar] [flax] HALZ Homeobox associated leucine zipper
Representative CDS sequence Show only first row Show all	>Potri.006G117700.1 pacid=42767386 polypeptide=Potri.006G117700.1.p locus=Potri.006G117700 ID=Potri.006G117700.1.v4.1 annot-version=v4.1 ATGAATATGGATAATATGGATTGGAATGGCAACTTCAGAAGCTTTGTTTCTCGACCAGATCAGACTTCCTTTAACTTCCTCTACAACTATGCCTATGACC CGCAGTATCCAGGCATGGACATGAAGCACCCAGCAATATTAGCAGAAAATGCACCCAACAGATTCGTCCCAACCGCTCTGGACAAGATCACCAGCTATGA GAGTCAAGAGAAGAAGAAGCGATTGACAAGTGACCAGTTAGAGTCGTTGGAGAAGAGCTTTCAAGAAGAGATCAAGTTGGATCCTGATAGGAAAATGAAG CTGTCTCGTGAACTAGGGCTCCAGCCCAGGCAGATTGCTGTTTGGTTCCAGAATAGACGTGCTAGATGGAAAGCTAAACAGCTCGAGCGCTTATATGACA ACCTTAAGCAGGAGTTTGATTCTGTGTCCAAAGAGAAACAGAAGCTTCAGGAAGAGGTAATGAAGCTGAAAGCAGTGGTGAGAGAACAAGCCACGAGGAA GCAAGTCTCAACAGCAGGGTACACAGAGATATCAGGGGAAGAGACAGTAGAAAGCACATCAGTTGCTGCAGCAAGTCGCAAGCTACGAGGACACAGTCAC CACCAGAACAACGCAGAACACTGCAACTATCTTCTCAATGTGGATGAATACAACCCAGTTTCATCTCCTTACTGGGCTCTTTTGCCATCTTATCCTTGA
AA sequence Show only first row Show all	>Potri.006G117700.1 pacid=42767386 polypeptide=Potri.006G117700.1.p locus=Potri.006G117700 ID=Potri.006G117700.1.v4.1 annot-version=v4.1 MNMDNMDWNGNFRSFVSRPDQTSFNFLYNYAYDPQYPGMDMKHPAILAENAPNRFVPTALDKITSYESQEKKKRLTSDQLESLEKSFQEEIKLDPDRKMK LSRELGLQPRQIAVWFQNRRARWKAKQLERLYDNLKQEFDSVSKEKQKLQEEVMKLKAVVREQATRKQVSTAGYTEISGEETVESTSVAAASRKLRGHSH HQNNAEHCNYLLNVDEYNPVSSPYWALLPSYP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03790	HD	LMI1, ATHB51	LATE MERISTEM IDENTITY1, homeo...		Potri.006G117700 [exp]	0	1
AT2G23060			Acyl-CoA N-acyltransferases (N...		Potri.010G144700 [exp]	2.82	0.9563
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.001G227400 [exp]	6.48	0.9509
AT5G66800			unknown protein		Potri.007G042600 [exp]	6.92	0.9235
AT1G14440	ZF_HD	ATHB31, ZHD4	ZINC FINGER HOMEODOMAIN 4, hom...		Potri.002G035200 [exp]	7.74	0.9481
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.001G227300 [exp]	8.66	0.9440
AT2G47630			alpha/beta-Hydrolases superfam...		Potri.002G204200 [exp]	9.00	0.9338
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Potri.005G084500 [exp]	9.79	0.9361
AT2G18350	ZF_HD	ATHB24, ZHD6	ZINC FINGER HOMEODOMAIN 6, hom...		Potri.005G227900 [exp]	10.24	0.9365
AT4G21750	HD	ATML1	MERISTEM LAYER 1, Homeobox-leu...		Potri.011G025000 [exp]	11.74	0.9397	Pt-ATML1.1
AT3G57670	C2H2ZnF	WIP2, NTT	WIP domain protein 2, NO TRANS...		Potri.001G267900 [exp]	12.00	0.9123

Compare expression of checked genes

Potri.006G117700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.