Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53030 741 / 0 SRPK4 ser/arg-rich protein kinase 4 (.1) AT3G44850 694 / 0 Protein kinase superfamily protein (.1) AT5G22840 693 / 0 Protein kinase superfamily protein (.1) AT4G35500 487 / 4e-169 Protein kinase superfamily protein (.1.2) AT2G17530 262 / 1e-82 Protein kinase superfamily protein (.1.2.3) AT4G24740 113 / 8e-27 AME1, AFC2 FUS3-complementing gene 2 (.1.2) AT4G32660 108 / 1e-25 AME3 Protein kinase superfamily protein (.1.2.3) AT3G53570 106 / 3e-24 AME2, AFC1 FUS3-complementing gene 1 (.1.2.3.4) AT5G35980 101 / 2e-22 YAK1 yeast YAK1-related gene 1 (.1.2) AT1G73450 97 / 1e-20 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G190400 [exp] 763 / 0 AT3G44850 769 / 0.0 Protein kinase superfamily protein (.1) Potri.009G151500 [exp] 749 / 0 AT3G44850 735 / 0.0 Protein kinase superfamily protein (.1) Potri.007G063100 [exp] 497 / 3e-173 AT2G17530 679 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G102100 [exp] 266 / 2e-83 AT2G17530 703 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.006G244400 [exp] 114 / 3e-27 AT4G32660 634 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.015G085700 [exp] 110 / 7e-26 AT4G24740 747 / 0.0 FUS3-complementing gene 2 (.1.2) Potri.012G089700 [exp] 109 / 2e-25 AT4G24740 744 / 0.0 FUS3-complementing gene 2 (.1.2) Potri.016G079900 [exp] 108 / 4e-25 AT3G53570 732 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Potri.006G213400 [exp] 105 / 4e-24 AT3G53570 720 / 0.0 FUS3-complementing gene 1 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020515 [exp] 679 / 0 AT5G22840 684 / 0.0 Protein kinase superfamily protein (.1) Lus10005363 [exp] 673 / 0 AT3G44850 681 / 0.0 Protein kinase superfamily protein (.1) Lus10005364 [exp] 629 / 0 AT3G53030 653 / 0.0 ser/arg-rich protein kinase 4 (.1) Lus10020516 [exp] 624 / 0 AT3G53030 647 / 0.0 ser/arg-rich protein kinase 4 (.1) Lus10016690 [exp] 488 / 2e-169 AT4G35500 683 / 0.0 Protein kinase superfamily protein (.1.2) Lus10035984 [exp] 486 / 7e-169 AT4G35500 694 / 0.0 Protein kinase superfamily protein (.1.2) Lus10019458 [exp] 111 / 5e-26 AT4G24740 729 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10024431 [exp] 110 / 2e-25 AT3G53570 732 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Lus10025301 [exp] 109 / 2e-25 AT3G53570 726 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Lus10043309 [exp] 109 / 2e-25 AT4G24740 730 / 0.0 FUS3-complementing gene 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.006G117800.1 pacid=42770099 polypeptide=Potri.006G117800.1.p locus=Potri.006G117800 ID=Potri.006G117800.1.v4.1 annot-version=v4.1 ATGGATGAGCAGCGGCGGCAGCAGCAGCAGCAAGTGAAAGTAGAAGAGGAGGATCGGAGCAGTAGCAGTGATAGCGGAGACTACACGTCGGAAGACGAAG GAACCGAAGATTACAGGCGCGGCGGCTACCATGCTGTTCGAATCGGAGACAGTTTCAAGAACGGACGATATGTCGTTCAGAGTAAGCTTGGTTGGGGTCA TTTCTCCACCGTCTGGCTCGCTTGGGACACTCAAATTTCCCGATATGTAGCTCTCAAGGTACAAAAAAGTGCTCAGCACTACACCGAGGCAGCCATGGAT GAGATAACCATCTTGCAGCAGATTGCAGATGGAGACCCTGATGATAAAAAATGCGTTGTAAAGCTTTTGGATCATTTTAAACATTCGGGTCCGAATGGTC AGCATGTTTGTATGGTTTTCGAGTACCTGGGGGATAATCTTTTGACCTTCATCAAATATTCTGATTACCGGGGACTGCCTATTCACAAGGTTAAGGAGAT ATGTTTCAATGTCTTAGTGGGTTTGGATTACTTACACAGACAGCTTTCTATCATTCACACTGATCTGAAGCCAGAGAACATATTGCTATTAACAATGATT GACCCATCAAAGGATCCTAGAAAATCTGGTGCTCCTCTTATTCTTCCGAATAGTAAGGATAAGTCTGCATTGGAGTCTGGGATTGCAAGATTAAATGGAG ACTTGTCTAGGAATCAGAAGAAAAAGATTCGAAGAAAGGCTAAGCGAGCAGCTCAGGGGTGTGTGGAGAAGGAAGCGGATGCAGATCCTGAAACATCTGC TTTGGAAGAGTTGTCAGCTAATGCAAAATTAAATGAGGGTTCTACTGAGGAGCAGCCTACTAGTTCAGAAAATGCAAATAGATTTTCTGATGTTGATCGA ACAAGGGGCACTGGATTGGGAAATCAGGGCACTAAGAGGGGGAGCCGTTCCAACAGGCAGAACTTGTTGGCCTCAGTTGACCTGAAGTGCAAGTTGGTGG ACTTTGGGAATGCATGCTGGACGTACAAACAGTTTACGAATGACATTCAAACTAGGCAGTACCGTTGTCCAGAGGTGATCCTTGGATCCAAATATTCTAC ATCTGCAGATATGTGGTCCTTTGCTTGCATTTGTTTTGAGCTGGCAACTGGTGATGTACTTTTTGACCCTCACAGCGGTGACAACTTCGACAGGGATGAG GACCACTTAGCATTGATGATGGAGCTTCTTGGAATGATGCCGCGGAAGATTGCCTTAGGTGGCCGCTATTCCCGGGACTTCTTTAATAGATATGGTGATC TGCGGCACATACGAAGGTTGCGTTTCTGGCCCTTGAATAAGGTTCTCATGGAGAAGTATGAATTTAGTGAGAAAGATGCAAATGAAATGACAGAATTCTT GATTCCTATCCTTGATTTTGTCCCTGAGAAGCGGCCGACTGCAGCTCAGTGTCTTCTTCATCCATGGATTAATGCAGGCCCTAATGTTTTAGAACAGTCT GGTCAAAACCAAGCTTTAGAAAGTCTAAATTCAGAGAAAAAGAAGAGGGAGAAAGATGAGAGGGAGGCAATGGAGATTGGACTGGGGAATATAGCTATCA ATGTAGAATCTAAAGGAGTTAAAGATCCTACTTCCAGTAATGTAAAGCTATCCCAAGCAACTACAAGCAGTTCATCTAGATAA
AA sequence Show only first row Show all	>Potri.006G117800.1 pacid=42770099 polypeptide=Potri.006G117800.1.p locus=Potri.006G117800 ID=Potri.006G117800.1.v4.1 annot-version=v4.1 MDEQRRQQQQQVKVEEEDRSSSSDSGDYTSEDEGTEDYRRGGYHAVRIGDSFKNGRYVVQSKLGWGHFSTVWLAWDTQISRYVALKVQKSAQHYTEAAMD EITILQQIADGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGDNLLTFIKYSDYRGLPIHKVKEICFNVLVGLDYLHRQLSIIHTDLKPENILLLTMI DPSKDPRKSGAPLILPNSKDKSALESGIARLNGDLSRNQKKKIRRKAKRAAQGCVEKEADADPETSALEELSANAKLNEGSTEEQPTSSENANRFSDVDR TRGTGLGNQGTKRGSRSNRQNLLASVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTSADMWSFACICFELATGDVLFDPHSGDNFDRDE DHLALMMELLGMMPRKIALGGRYSRDFFNRYGDLRHIRRLRFWPLNKVLMEKYEFSEKDANEMTEFLIPILDFVPEKRPTAAQCLLHPWINAGPNVLEQS GQNQALESLNSEKKKREKDEREAMEIGLGNIAINVESKGVKDPTSSNVKLSQATTSSSSR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53030		SRPK4	ser/arg-rich protein kinase 4 ...		Potri.006G117800 [exp]	0	1
AT3G23410		ATFAO3	ARABIDOPSIS FATTY ALCOHOL OXID...		Potri.010G069100 [exp]	4.00	0.8014
AT1G75510			Transcription initiation facto...		Potri.002G028900 [exp]	10.09	0.7989
AT1G69340			appr-1-p processing enzyme fam...		Potri.008G093100 [exp]	17.88	0.7425
AT4G22560			unknown protein		Potri.001G121600 [exp]	21.28	0.7902
AT2G32900		ATZW10	centromere/kinetochore protein...		Potri.002G223600 [exp]	21.93	0.7078	Pt-ZW10.1
AT5G13340			unknown protein		Potri.019G001900 [exp]	30.93	0.7372
AT1G24560			unknown protein		Potri.008G184600 [exp]	32.06	0.7618
AT5G55000		FIP2	potassium channel tetramerisat...		Potri.019G038400 [exp]	39.19	0.7329
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.006G013200 [exp]	49.81	0.7245
AT1G47310			unknown protein		Potri.014G036300 [exp]	74.93	0.6783

Compare expression of checked genes

Potri.006G117800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.