Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36630 578 / 0 Sulfite exporter TauE/SafE family protein (.1) AT2G25737 346 / 4e-115 Sulfite exporter TauE/SafE family protein (.1) AT1G61740 105 / 3e-24 Sulfite exporter TauE/SafE family protein (.1) AT1G11540 99 / 2e-22 Sulfite exporter TauE/SafE family protein (.1) AT4G21250 93 / 2e-20 Sulfite exporter TauE/SafE family protein (.1) AT4G21260 76 / 8e-15 Sulfite exporter TauE/SafE family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G053000 [exp] 352 / 4e-117 AT2G25737 501 / 2e-175 Sulfite exporter TauE/SafE family protein (.1) Potri.018G037500 [exp] 341 / 5e-113 AT2G25737 529 / 0.0 Sulfite exporter TauE/SafE family protein (.1) Potri.001G183300 [exp] 340 / 1e-112 AT2G25737 381 / 2e-128 Sulfite exporter TauE/SafE family protein (.1) Potri.006G242100 [exp] 339 / 2e-112 AT2G25737 568 / 0.0 Sulfite exporter TauE/SafE family protein (.1) Potri.018G037400 [exp] 339 / 4e-112 AT2G25737 535 / 0.0 Sulfite exporter TauE/SafE family protein (.1) Potri.007G026800 [exp] 335 / 1e-110 AT2G25737 434 / 2e-149 Sulfite exporter TauE/SafE family protein (.1) Potri.005G124200 [exp] 332 / 1e-109 AT2G25737 453 / 1e-156 Sulfite exporter TauE/SafE family protein (.1) Potri.001G183400 [exp] 328 / 8e-108 AT2G25737 418 / 5e-143 Sulfite exporter TauE/SafE family protein (.1) Potri.001G182700 [exp] 313 / 4e-102 AT2G25737 428 / 6e-147 Sulfite exporter TauE/SafE family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029813 [exp] 611 / 0 AT2G36630 612 / 0.0 Sulfite exporter TauE/SafE family protein (.1) Lus10020733 [exp] 607 / 0 AT2G36630 611 / 0.0 Sulfite exporter TauE/SafE family protein (.1) Lus10011682 [exp] 348 / 5e-116 AT2G25737 632 / 0.0 Sulfite exporter TauE/SafE family protein (.1) Lus10014316 [exp] 332 / 3e-109 AT2G25737 536 / 0.0 Sulfite exporter TauE/SafE family protein (.1) Lus10026025 [exp] 324 / 4e-106 AT2G25737 533 / 0.0 Sulfite exporter TauE/SafE family protein (.1) Lus10011683 [exp] 263 / 4e-83 AT2G25737 444 / 9e-154 Sulfite exporter TauE/SafE family protein (.1) Lus10020068 [exp] 97 / 2e-21 AT1G61740 371 / 2e-125 Sulfite exporter TauE/SafE family protein (.1) Lus10022134 [exp] 92 / 2e-21 AT2G25737 168 / 8e-50 Sulfite exporter TauE/SafE family protein (.1) Lus10022133 [exp] 76 / 1e-16 AT2G25737 106 / 2e-28 Sulfite exporter TauE/SafE family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0292 [poplar] [flax] LysE PF01925 [poplar] [flax] TauE Sulfite exporter TauE/SafE
Representative CDS sequence Show only first row Show all	>Potri.006G117900.1 pacid=42767168 polypeptide=Potri.006G117900.1.p locus=Potri.006G117900 ID=Potri.006G117900.1.v4.1 annot-version=v4.1 ATGGCCACTAGAGGATTGGTGCTTTATCTGTTATCAGGTTTCTCTGTGGCTATCCTTTCTGTGTTCTTCCTCTCCCATCCAAATGAGAAAGCCTCACCGA ATCCTAATTCTGATATCTTCGCCTCCCCCTACCTATCCACCACAGACAAAGTTTGGCCTAAATTAGAGTTTAGTTGGAGAACAGTGCTGGCCACAGTGAT AGGACTTCTAGGATCGGCGTGCGGTACGGTTGGTGGAGTTGGAGGGGGTGGCATTTTCGTCCCCATGCTTACTTTGATTGTTGGATTTGATACCAAGTCT GCTGCTGCTCTTTCTAAATGTATGATCATGGCGGCATCAGCATCATCTGTTTGGTACAATCTAAGAGTGCCCCACCCAACAAGAGAAGTGCCCATCATAG ACTATGACTTGGCTCTCCTCTTCCAGCCCATGCTTTTGCTTGGCATCACCCTTGGTGTTTCCTTGAGTGTTGTTTTTCCTTACTGGTTAATTACTGTCCT CATCATCATACTCTTCATAGGGACCTCTTCTAGGTCTTTCTTCAAGGGAATTGAAATGTGGAAGGAAGAGACAATTTTGAAGAAAGAAATGGTCATCCAA CAAGAAACTATAGTTAACTCCCGTGGCGAACTTCTGATTGATACAGAGTATGAGCCACTGATCCCTAGAGAAGAGAAATCAAAAATGCAAATATTGTGCT TCAACCTGAAATGGAAAAGGCTTTTGATTCTGTTCCTTGTTTGGACTTCTTTCCTCCTTCTTCAAGTTATCAAGAATGATGTAGCTGTTTGCAGTACATG GTACTGGGTCCTCTTCTGCCTACAGTTTCCTATAGCATTTGGGGTATTCGGATATGAAGCAGTCAAATTATACAGAGAAAACAAGAAGAGGATTAGCACA GGAAACACAGAAACAATTTGTGAGGCTTCTATTGAATGGACTCCCATGCACATTTTATTCTGCGCACTCTGTGGCATCATAGGAGGCACCGTTGGGGGTC TTCTTGGATCAGGCGGTGGATTCGTTCTGGGACCTCTGCTCCTCGAGATCGGTGTCAGCCCCCATGTTGCCAGTGCAACAAGTACATTCGTTATGATGTT CTCATCATCCCTGTCTGTGGTGGAGTTTTATCTCCTTAAGAGGTTCCCAATACCTTTCGCATTGTATCTCATGGGAGTGTCTGTTTTGGCTGGCTTCTGG GGACAGTTTTTTGTAAGAAAACTCGTTAAAATTCTAGGAAGAGCTTCGCTCATTGTATTCATCCTCTCTGGTGTCATCTTCGTTAGTGCTCTCACAATGG GAGGTGTTGGTATTGACACGAGCATAACAATGATACGCAATCATGAGTTTATGGGATTCTTGGAGTTTTGCAGCAGTCAATGA
AA sequence Show only first row Show all	>Potri.006G117900.1 pacid=42767168 polypeptide=Potri.006G117900.1.p locus=Potri.006G117900 ID=Potri.006G117900.1.v4.1 annot-version=v4.1 MATRGLVLYLLSGFSVAILSVFFLSHPNEKASPNPNSDIFASPYLSTTDKVWPKLEFSWRTVLATVIGLLGSACGTVGGVGGGGIFVPMLTLIVGFDTKS AAALSKCMIMAASASSVWYNLRVPHPTREVPIIDYDLALLFQPMLLLGITLGVSLSVVFPYWLITVLIIILFIGTSSRSFFKGIEMWKEETILKKEMVIQ QETIVNSRGELLIDTEYEPLIPREEKSKMQILCFNLKWKRLLILFLVWTSFLLLQVIKNDVAVCSTWYWVLFCLQFPIAFGVFGYEAVKLYRENKKRIST GNTETICEASIEWTPMHILFCALCGIIGGTVGGLLGSGGGFVLGPLLLEIGVSPHVASATSTFVMMFSSSLSVVEFYLLKRFPIPFALYLMGVSVLAGFW GQFFVRKLVKILGRASLIVFILSGVIFVSALTMGGVGIDTSITMIRNHEFMGFLEFCSSQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36630			Sulfite exporter TauE/SafE fam...		Potri.006G117900 [exp]	0	1
AT3G45260	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.006G227600 [exp]	3.87	0.9141
AT2G02070	C2H2ZnF	ATIDD5	indeterminate(ID)-domain 5 (.1...		Potri.010G099100 [exp]	6.32	0.9300
AT1G13480			Protein of unknown function (D...		Potri.010G133500 [exp]	6.78	0.8831
AT5G62680			Major facilitator superfamily ...		Potri.001G351200 [exp]	7.61	0.9211
AT3G02150	TCP	TFPD, PTF1, TCP...	TEOSINTE BRANCHED1, CYCLOIDEA ...		Potri.017G094800 [exp]	10.95	0.9187
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Potri.001G100800 [exp]	15.19	0.9195
AT3G49055			unknown protein		Potri.015G146100 [exp]	21.49	0.8906
AT2G21080			unknown protein		Potri.006G279200 [exp]	23.66	0.8943
AT5G45800		MEE62	maternal effect embryo arrest ...		Potri.004G058500 [exp]	23.91	0.8988
AT3G53160		UGT73C7	UDP-glucosyl transferase 73C7 ...		Potri.001G133100 [exp]	24.00	0.8729

Compare expression of checked genes

Potri.006G117900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.