Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03795 609 / 0 Exostosin family protein (.1) AT3G07620 457 / 6e-158 Exostosin family protein (.1) AT5G25310 429 / 1e-146 Exostosin family protein (.1) AT5G11130 415 / 3e-141 Exostosin family protein (.1) AT3G42180 391 / 6e-132 Exostosin family protein (.1.3) AT5G33290 386 / 1e-129 XGD1 xylogalacturonan deficient 1 (.1) AT5G20260 379 / 3e-127 Exostosin family protein (.1) AT4G16745 352 / 6e-116 Exostosin family protein (.1.2) AT5G11610 337 / 9e-110 Exostosin family protein (.1.2) AT5G25820 336 / 3e-108 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G171100 [exp] 548 / 0 AT5G03795 476 / 1e-164 Exostosin family protein (.1) Potri.014G170900 [exp] 514 / 6e-180 AT3G07620 572 / 0.0 Exostosin family protein (.1) Potri.T124507 [exp] 434 / 7e-149 AT3G42180 526 / 0.0 Exostosin family protein (.1.3) Potri.018G124832 [exp] 433 / 2e-148 AT3G42180 524 / 0.0 Exostosin family protein (.1.3) Potri.018G025400 [exp] 433 / 5e-148 AT5G25310 518 / 0.0 Exostosin family protein (.1) Potri.018G124945 [exp] 420 / 3e-143 AT5G20260 548 / 0.0 Exostosin family protein (.1) Potri.T124607 [exp] 419 / 6e-143 AT5G20260 545 / 0.0 Exostosin family protein (.1) Potri.006G064600 [exp] 419 / 9e-143 AT5G20260 543 / 0.0 Exostosin family protein (.1) Potri.006G064700 [exp] 417 / 9e-142 AT5G20260 563 / 0.0 Exostosin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039142 [exp] 700 / 0 AT5G03795 603 / 0.0 Exostosin family protein (.1) Lus10013790 [exp] 672 / 0 AT5G03795 602 / 0.0 Exostosin family protein (.1) Lus10025178 [exp] 502 / 3e-175 AT5G03795 471 / 5e-163 Exostosin family protein (.1) Lus10008751 [exp] 469 / 1e-161 AT3G07620 542 / 0.0 Exostosin family protein (.1) Lus10016058 [exp] 454 / 2e-158 AT5G03795 439 / 1e-152 Exostosin family protein (.1) Lus10001917 [exp] 434 / 4e-148 AT5G25310 499 / 3e-174 Exostosin family protein (.1) Lus10027707 [exp] 402 / 2e-136 AT5G20260 526 / 0.0 Exostosin family protein (.1) Lus10005186 [exp] 386 / 6e-130 AT5G20260 513 / 3e-180 Exostosin family protein (.1) Lus10039980 [exp] 367 / 4e-121 AT5G20260 489 / 2e-169 Exostosin family protein (.1) Lus10001958 [exp] 345 / 2e-116 AT5G25310 372 / 1e-127 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [poplar] [flax] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Potri.006G118000.2 pacid=42768918 polypeptide=Potri.006G118000.2.p locus=Potri.006G118000 ID=Potri.006G118000.2.v4.1 annot-version=v4.1 ATGAAGCTCATGGTGTTAATGGTTCCATTGATACTGGTTTCTGGGTTTGTTGTCATTTTTGGTCTAAGATCTACTACGACTTCCAGCTGGGATTTTATAG CAAGACAACCGGCCTGGCTATGGTGGGGACATGGTAATTCTTCTTTAAACGGTGCTAGTAGTGTCACGGTACATGCAAAAGAGAGTGATGAGTCTCCGCC TCTTATTAACGGCTTTTCTCCTCCACCGCAAGCTGTTGAGGCGTTACCATTTGAAGAGCCTAATGTTTTGAAACAAGATGTTTCAGAAACTTCAGGGCCC ATTGCTGCCCCAGCAAACGAAGCTCTTGATCTTGCCAGAAAAACAAGACATAAAACCGAGCACACCAGCCTAGAGAAACTCGAAGCAGGCCTTCAAAAAG CTCGAGTTGCATTAAAAGAGGCTAAAAATGGAAAGCAAGCAGATGACCCTGATTATGCTCCGGCAGGCCCTATGTACTGGAATGCCGAAGTCTTTCACAG GAGTTATTTGGAAATGGAAAAACAGTTTAAGGTCTTTGTGTATGGAGAGGGGGAGCCCCCTGTATTTCATAATGGTCCTTGCAGGAGCATATACTCCATG GAAGGAAATTTTATTCACAGGATGGAGATTGATGGCCATTTCCGTACCAAGGATCCGGACAAAGCACACGTTTATTTCCTCCCCTTCAGCGTAGCTATGA TGGTTCGATTTGTCTACGAGCGGGAGTCACGGGATTTTGGTCCGATAAGGAGGACTGTGTCGGACTACATCAATCTAATCAGTGGAAAATATCCATTTTG GAATCGAAGTCTTGGTGCCGATCATTTCATGCTTGCTTGCCATGACTGGGGGCCAGAAGCTTCATTTTCCGTTCCTCATCTAGGCAAAATCTCAATTCGC GCACTATGCAATGCCAACACCTCAGAAAAATTCAACCCCATCAAAGATGTATCCTTGCCAGAGATCAATCTCCGAACCGGTTCAATAAAGGGCTTCGTTG GTGGACTATCTCCATCAAAACGCTCAATCTTAGCTTTCTTTGCAGGAAGGCTTCATGGTCCTATCAGACCTGTAGTTCTTGAGCACTGGGAAAATAAGGA TGACGATATCAAGGTGCATCAGCAGCTCCCAAAAGGGGTATCTTACTATGAAATGATGAGGGGAAGCAAGTTTTGCCTTTGTCCAAGTGGTTATGAAGTT GCAAGTCCCAGAATTGTCGAGGCGCTCTACGCTGGGTGCGTTCCAGTGCTGATTTCAGATCATTACGTGCCACCTTTTAGTGATGTCTTGAATTGGAAGT CATTCTCTGTTGAGGTTCCGGTGAGTGATATTCCCAGCTTGAAGAAGATATTGACAAGTATATCTCCAAGGCAATACATAAGAATGCAAAGAAGAGTGCT GCAAGTAAGGAGGCACTTCGAGGTTAATTCTCCTCCAAAGCGGTTTGATGTCTTCCACATGATTCTTCATTCTATTTGGCTTCGTAGATTGAATGTTGGA ATTCATGATGATCAATTAGCCATCACCAGCTGA
AA sequence Show only first row Show all	>Potri.006G118000.2 pacid=42768918 polypeptide=Potri.006G118000.2.p locus=Potri.006G118000 ID=Potri.006G118000.2.v4.1 annot-version=v4.1 MKLMVLMVPLILVSGFVVIFGLRSTTTSSWDFIARQPAWLWWGHGNSSLNGASSVTVHAKESDESPPLINGFSPPPQAVEALPFEEPNVLKQDVSETSGP IAAPANEALDLARKTRHKTEHTSLEKLEAGLQKARVALKEAKNGKQADDPDYAPAGPMYWNAEVFHRSYLEMEKQFKVFVYGEGEPPVFHNGPCRSIYSM EGNFIHRMEIDGHFRTKDPDKAHVYFLPFSVAMMVRFVYERESRDFGPIRRTVSDYINLISGKYPFWNRSLGADHFMLACHDWGPEASFSVPHLGKISIR ALCNANTSEKFNPIKDVSLPEINLRTGSIKGFVGGLSPSKRSILAFFAGRLHGPIRPVVLEHWENKDDDIKVHQQLPKGVSYYEMMRGSKFCLCPSGYEV ASPRIVEALYAGCVPVLISDHYVPPFSDVLNWKSFSVEVPVSDIPSLKKILTSISPRQYIRMQRRVLQVRRHFEVNSPPKRFDVFHMILHSIWLRRLNVG IHDDQLAITS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03795			Exostosin family protein (.1)		Potri.006G118000 [exp]	0	1
AT5G50335			unknown protein		Potri.015G091300 [exp]	1.00	0.9821
AT1G05835			PHD finger protein (.1)		Potri.002G233000 [exp]	14.69	0.9813
AT5G41040			HXXXD-type acyl-transferase fa...		Potri.014G166600 [exp]	18.33	0.9792	HCQL4
AT5G20950			Glycosyl hydrolase family prot...		Potri.013G055700 [exp]	20.12	0.9512
AT4G18970			GDSL-like Lipase/Acylhydrolase...		Potri.019G008904 [exp]	23.87	0.9787
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.019G008404 [exp]	26.26	0.9787
AT3G11680			Aluminium activated malate tra...		Potri.016G070100 [exp]	29.93	0.9785
AT5G33370			GDSL-like Lipase/Acylhydrolase...		Potri.013G051100 [exp]	33.91	0.9784
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.019G008406 [exp]	35.72	0.9782
					Potri.004G009900 [exp]	38.66	0.9777

Compare expression of checked genes

Potri.006G118000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.