Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03820 478 / 2e-170 GDSL-like Lipase/Acylhydrolase family protein (.1) AT5G03810 474 / 1e-168 GDSL-like Lipase/Acylhydrolase family protein (.1) AT3G53100 462 / 4e-164 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G22810 452 / 3e-160 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G16370 408 / 7e-143 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G04570 280 / 2e-92 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G75900 270 / 3e-88 EXL3 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G26790 255 / 1e-82 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G42170 255 / 1e-82 SGNH hydrolase-type esterase superfamily protein (.1) AT1G20120 256 / 2e-82 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G151000 [exp] 469 / 8e-167 AT5G22810 504 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G191400 [exp] 406 / 7e-142 AT3G16370 508 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G191600 [exp] 337 / 2e-114 AT3G16370 410 / 1e-142 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.006G144400 [exp] 313 / 6e-106 AT3G16370 375 / 2e-130 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G219700 [exp] 291 / 1e-96 AT2G42990 439 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160200 [exp] 288 / 8e-96 AT2G42990 437 / 3e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G018800 [exp] 276 / 4e-90 AT1G75900 415 / 2e-144 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G242800 [exp] 273 / 2e-89 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160100 [exp] 267 / 2e-87 AT2G04570 497 / 5e-178 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008635 [exp] 499 / 9e-179 AT5G03810 460 / 3e-163 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10008639 [exp] 474 / 1e-168 AT5G03810 463 / 2e-164 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10040791 [exp] 470 / 4e-167 AT5G03810 465 / 2e-165 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10035590 [exp] 451 / 7e-160 AT5G03810 427 / 1e-150 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10035585 [exp] 434 / 9e-154 AT5G03810 419 / 1e-147 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10006856 [exp] 420 / 3e-147 AT3G16370 507 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10037598 [exp] 419 / 6e-147 AT3G16370 502 / 6e-180 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10006855 [exp] 384 / 7e-133 AT3G16370 445 / 4e-157 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034540 [exp] 286 / 8e-95 AT1G75900 456 / 2e-161 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003717 [exp] 285 / 2e-94 AT1G75900 458 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.006G118300.1 pacid=42769385 polypeptide=Potri.006G118300.1.p locus=Potri.006G118300 ID=Potri.006G118300.1.v4.1 annot-version=v4.1 ATGGGGAATGCAAATAGTTTTTGGGCTACTTTCTTTCTTCTTGTTTTAGTTGCCTCTGTAGCTCGTGGGGATCCTCTTGTTCCGGCACTTATCATCTTTG GAGACTCAGTTGTTGACGTGGGTAACAACAATAACCTCACTACACTCATCAAGGCAAACTTCCTTCCTTATGGAAGAGATTATGTTACTCACAGACCAAC TGGAAGATTCTGTAATGGGAAGCTAGCAACAGACTTCACAGCTGAATACCTAGGCTTCACCACATACCCACCAGCCTACCTTAGCCCAGATGCCAGCGGA AGAAACATCCTAACTGGAGCCAACTTTGCCTCAGCTGCTTCTGGCCTTTATGACGGGACAGCCCAGTCATATAGTTCCATTTCTTTGACCAGGCAGTTGA GCTACTACAGGGATTACCAAATGAAAGTTGTCAACATGGCTGGACAAGCCAGGGCCAATGACATATTCTCCGGTGCTATCCATCTCTTGAGTGCAGGGAG CAGTGATTTTATTCAGAATTATTACATCAACCCAGTCCTTAGAGGACTATACTCAGTTGATCGGTTCTCAGACCTTCTCATGAGTTCCTACTCTAGTTTT ATTCAGAATCTCTATGGACTTGGAGCAAGAAGGATTGGAGTGACATCCCTACCTCCAACAGGGTGTTTGCCCGCAGCTATCACCCTCTTTGGCGCAGGAA GCAACCAGTGTGTCGAGAGTCTAAACCAAGATGCTATTTTGTTCAACGACAAACTAAACAGCACTTCCCAAGGCCTGGTGCAAAAGCTTCCTGGCCTCAA ACTTGTGGTCTTTGATATTTACCAGCCTCTCTTGGATATGATCAGGAAGCCCAGTGACAACGGTTTCTTTGAGTCGAGAAGGGCTTGCTGTGGTACAGGT ACACTAGAGACCTCAGTGCTCTGCAATGATCGGTCTGTGGGAACATGCTCCAATGCCACAGAGTATGTGTTCTGGGATGGATTCCATCCCTCTGAAGCTG CTAACCAGGTCTTGGCTGGTGATCTCCTTCAACAGGGATTCGACCTCATCTCTTAG
AA sequence Show only first row Show all	>Potri.006G118300.1 pacid=42769385 polypeptide=Potri.006G118300.1.p locus=Potri.006G118300 ID=Potri.006G118300.1.v4.1 annot-version=v4.1 MGNANSFWATFFLLVLVASVARGDPLVPALIIFGDSVVDVGNNNNLTTLIKANFLPYGRDYVTHRPTGRFCNGKLATDFTAEYLGFTTYPPAYLSPDASG RNILTGANFASAASGLYDGTAQSYSSISLTRQLSYYRDYQMKVVNMAGQARANDIFSGAIHLLSAGSSDFIQNYYINPVLRGLYSVDRFSDLLMSSYSSF IQNLYGLGARRIGVTSLPPTGCLPAAITLFGAGSNQCVESLNQDAILFNDKLNSTSQGLVQKLPGLKLVVFDIYQPLLDMIRKPSDNGFFESRRACCGTG TLETSVLCNDRSVGTCSNATEYVFWDGFHPSEAANQVLAGDLLQQGFDLIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03820			GDSL-like Lipase/Acylhydrolase...		Potri.006G118300 [exp]	0	1
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Potri.010G100500 [exp]	2.44	0.8661
AT2G36960	MYB	TKI1	TSL-kinase interacting protein...		Potri.006G125400 [exp]	9.59	0.7839	Pt-TKI1.2
AT4G20970	bHLH	bHLH162	basic helix-loop-helix (bHLH) ...		Potri.011G053400 [exp]	9.59	0.8201
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Potri.002G150300 [exp]	14.07	0.8533
AT1G66760			MATE efflux family protein (.1...		Potri.017G120600 [exp]	17.20	0.8550
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Potri.009G142000 [exp]	25.13	0.8508
AT5G01210			HXXXD-type acyl-transferase fa...		Potri.006G097500 [exp]	25.69	0.8123
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.008G034300 [exp]	26.98	0.7754
					Potri.005G000066 [exp]	27.38	0.8005
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.005G014900 [exp]	31.65	0.7078

Compare expression of checked genes

Potri.006G118300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.