Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10050 869 / 0 OMR1 L-O-methylthreonine resistant 1 (.1) AT4G11640 111 / 8e-27 ATSR serine racemase (.1) AT3G61440 55 / 1e-07 ATCYSC1, ARATH;BSAS3;1 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) AT2G43750 46 / 4e-05 CPACS1, ATCS-B, OASB CHLOROPLAST O-ACETYLSERINE SULFHYDRYLASE 1, ARABIDOPSIS THALIANA CYSTEIN SYNTHASE-B, ARABIDOPSIS CYSTEINE SYNTHASE 1, O-acetylserine (thiol) lyase B (.1), O-acetylserine (thiol) lyase B (.2) AT3G59760 44 / 0.0002 ATCS-C, OASC ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) AT5G28237 44 / 0.0002 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G106000 [exp] 108 / 1e-25 AT4G11640 460 / 9e-164 serine racemase (.1) Potri.002G160800 [exp] 54 / 1e-07 AT3G61440 570 / 0.0 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) Potri.014G086300 [exp] 52 / 5e-07 AT3G61440 570 / 0.0 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) Potri.013G127800 [exp] 51 / 2e-06 AT2G43750 516 / 0.0 CHLOROPLAST O-ACETYLSERINE SULFHYDRYLASE 1, ARABIDOPSIS THALIANA CYSTEIN SYNTHASE-B, ARABIDOPSIS CYSTEINE SYNTHASE 1, O-acetylserine (thiol) lyase B (.1), O-acetylserine (thiol) lyase B (.2) Potri.005G048066 [exp] 47 / 2e-05 AT3G04940 409 / 3e-144 cysteine synthase D1 (.1) Potri.008G153300 [exp] 47 / 3e-05 AT4G14880 482 / 6e-173 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.013G035500 [exp] 44 / 0.0002 AT4G14880 509 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.005G048700 [exp] 43 / 0.0004 AT4G14880 508 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014390 [exp] 888 / 0 AT3G10050 845 / 0.0 L-O-methylthreonine resistant 1 (.1) Lus10023884 [exp] 888 / 0 AT3G10050 838 / 0.0 L-O-methylthreonine resistant 1 (.1) Lus10027728 [exp] 837 / 0 AT3G10050 787 / 0.0 L-O-methylthreonine resistant 1 (.1) Lus10005369 [exp] 736 / 0 AT3G10050 685 / 0.0 L-O-methylthreonine resistant 1 (.1) Lus10008490 [exp] 120 / 7e-30 AT4G11640 489 / 3e-175 serine racemase (.1) Lus10020520 [exp] 97 / 2e-22 AT3G10050 94 / 5e-23 L-O-methylthreonine resistant 1 (.1) Lus10014765 [exp] 53 / 5e-07 AT3G61440 577 / 0.0 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) Lus10025589 [exp] 49 / 6e-06 AT3G59760 536 / 0.0 ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) Lus10027056 [exp] 48 / 2e-05 AT3G59760 533 / 0.0 ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) Lus10019003 [exp] 45 / 0.0001 AT4G14880 508 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00291 [poplar] [flax] PALP Pyridoxal-phosphate dependent enzyme CL0070 [poplar] [flax] ACT PF00585 [poplar] [flax] Thr_dehydrat_C C-terminal regulatory domain of Threonine dehydratase
Representative CDS sequence Show only first row Show all	>Potri.006G118400.1 pacid=42767931 polypeptide=Potri.006G118400.1.p locus=Potri.006G118400 ID=Potri.006G118400.1.v4.1 annot-version=v4.1 ATGGAGGCTCTCCGTCTACAGCCACCACAGGGACCACCACTCCTCCGCCCAAGCCGCTCCAGATTGCCCTCACAAATCCTCACTAGACCCCACTACAACC CCAACAAGTCAATCAAGCCGTTCATCAATGCCACCCTATCAAAACCCGCCGCGGAGATCCCTCCATTGTCAACTTCATCATCTACCTCCCACGACAATCC CTTACGCTCCTCCATGCTTTCTTCACCTCCATATCCCGCAAAGAAAGTCTCTGCAAATTCTCTGCAATACCCGTCCGGTTACTTGGGTGCCGTACCGGAA CGTACTGTTAATGATGGCGATAATGAGAGTATAATAAATGCAATGGAGTATTTGACGAATATACTGTCGTCAAAGGTGTATGACGTTGCGATTGAATCTC CTTTGCAGCTGGCGCCTAAGCTCTCTGAGAGATTAGGAGTCAAGGTTTGGCTCAAGAGAGAGGATTTGCAGCCGGTCTTTTCATTTAAGCTGCGTGGAGC TTACAATATGATGGCAAAACTTCCAAAGGAACAGCTGCAAAGAGGAGTTATCTGCTCATCAGCTGGAAATCATGCCCAAGGTGTTGCATTAGCCGCCAAA AGACTAGGTTGCGATGCTGTGATTGCAATGCCTGTTACTACACCTGAAATTAAGTGGCAATCTGTTGAGAGGTTGGGTGCGACAGTTGTTCTAGTTGGGG ATTCTTATGACGAAGCACAGACATATGCTAAAAAGAGGGCCAAAGAAGAGGATCGGACATTCATACCTCCTTTTGATCACCCAGATGTTATCATGGGACA GGGAACTGTTGGGATGGAAATTGTACGTCAAATGCAAGGTCCGTTGCATGCAATCTTTGTGCCTGTGGGTGGCGGCGGCTTAATAGCTGGTATTGCTGCA TATGTAAAGAGGGTAAATCCTGAGGTTAAGATCATTGGTGTGGAACCCTCTGATGCAAATGCTATGGCATTGTCTCTACATCATGGTCAGAGAGTGATGC TGGATCAGGTTGGAGGTTTTGCAGATGGTGTGGCTGTTAAAGAGGTTGGAGAAGAAACTTTCCGCTTATGCAAGGAATTGGTAGATGGTGTAGTTCTCGT GAGCCGTGACGCTATTTGTGCGTCAATAAAGGACATGTTTGAGGAGAAAAGGAGCATTCTAGAGCCAGCAGGTGCGCTTGCCCTTGCTGGGGCTGAAGCA TATTGCAAGTATTATGGCGTCAAGGGTGCAAATGTTGTGGCGATAACAAGTGGGGCAAATATGAACTTTGATAAACTGAGGGTTGTGACTGAACTTGCCA ATGTTGGTAGGCAACAAGAAGCTTTGCTTGCAACTGTTATGCCAGAGGTGCCAGGGAGTTTTAAACATTTTTGTGAACTGGTAGGGCCTATGAATATCTC TGAGTTCAAATATAGATCGAATTCTGAAAAGGATGCTGTTGTTCTATACAGTGTTGGCCTTCACACAGCTTTTGAACTTGAAGCAATGAAGAAGCGGATG GAATCTTCTCAACTAAGAACTTACAATTTGACCGCAAGTGACTTGGTCAAAGATCACTTGCGTTATTTGATTGGTGGCAAATTAAATGTTCCGGATGAGG TTCTTTGTCGTTTTGTTTTCCCAGAAAGGCCTGGTGCGTTGATGAAGTTTTTGGATTCTTTCAGTCCACGCTGGAACATTAGCTTGTTCCATTACAGAGG GCAGGGTGAAACTGGTGCCAATGTCCTGGTTGGCATCCAGGTTCCACAGAGTGAGATGGACGAATTCTGTAGTCGTGCCAACAGCCTTGGATATGATTAT GTTGTCGTAACTGATGACAATGACTTCCACCTTTTGATGCATTGA
AA sequence Show only first row Show all	>Potri.006G118400.1 pacid=42767931 polypeptide=Potri.006G118400.1.p locus=Potri.006G118400 ID=Potri.006G118400.1.v4.1 annot-version=v4.1 MEALRLQPPQGPPLLRPSRSRLPSQILTRPHYNPNKSIKPFINATLSKPAAEIPPLSTSSSTSHDNPLRSSMLSSPPYPAKKVSANSLQYPSGYLGAVPE RTVNDGDNESIINAMEYLTNILSSKVYDVAIESPLQLAPKLSERLGVKVWLKREDLQPVFSFKLRGAYNMMAKLPKEQLQRGVICSSAGNHAQGVALAAK RLGCDAVIAMPVTTPEIKWQSVERLGATVVLVGDSYDEAQTYAKKRAKEEDRTFIPPFDHPDVIMGQGTVGMEIVRQMQGPLHAIFVPVGGGGLIAGIAA YVKRVNPEVKIIGVEPSDANAMALSLHHGQRVMLDQVGGFADGVAVKEVGEETFRLCKELVDGVVLVSRDAICASIKDMFEEKRSILEPAGALALAGAEA YCKYYGVKGANVVAITSGANMNFDKLRVVTELANVGRQQEALLATVMPEVPGSFKHFCELVGPMNISEFKYRSNSEKDAVVLYSVGLHTAFELEAMKKRM ESSQLRTYNLTASDLVKDHLRYLIGGKLNVPDEVLCRFVFPERPGALMKFLDSFSPRWNISLFHYRGQGETGANVLVGIQVPQSEMDEFCSRANSLGYDY VVVTDDNDFHLLMH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10050		OMR1	L-O-methylthreonine resistant ...		Potri.006G118400 [exp]	0	1
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Potri.001G355200 [exp]	3.31	0.9289
AT5G11390		WIT1	WPP domain-interacting protein...		Potri.017G106400 [exp]	15.16	0.7962
AT5G50080	AP2_ERF	ERF110	ethylene response factor 110 ...		Potri.002G065600 [exp]	15.87	0.9103
AT5G34930			arogenate dehydrogenase (.1)		Potri.006G062600 [exp]	18.43	0.8363
AT5G50080	AP2_ERF	ERF110	ethylene response factor 110 ...		Potri.005G195000 [exp]	19.44	0.9002
					Potri.005G040650 [exp]	20.97	0.8748
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.011G037300 [exp]	22.00	0.9173
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Potri.010G041800 [exp]	26.72	0.9039
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.001G328000 [exp]	28.56	0.8989
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.011G037600 [exp]	30.39	0.9134

Compare expression of checked genes

Potri.006G118400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.