Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02070 577 / 0 Protein kinase family protein (.1) AT3G53840 488 / 1e-165 Protein kinase superfamily protein (.1) AT1G21250 301 / 3e-92 PRO25, WAK1 cell wall-associated kinase (.1) AT1G69730 300 / 3e-91 Wall-associated kinase family protein (.1) AT1G21210 297 / 1e-90 WAK4 wall associated kinase 4 (.1) AT1G21230 295 / 8e-90 WAK5 wall associated kinase 5 (.1) AT1G79680 295 / 8e-90 ATWAKL10 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1) AT2G23450 291 / 7e-89 Protein kinase superfamily protein (.1.2) AT1G21240 291 / 2e-88 WAK3 wall associated kinase 3 (.1) AT1G79670 289 / 5e-88 WAKL22, RFO1 RESISTANCE TO FUSARIUM OXYSPORUM 1, Wall-associated kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G059900 [exp] 597 / 0 AT5G02070 628 / 0.0 Protein kinase family protein (.1) Potri.006G090200 [exp] 565 / 0 AT5G02070 783 / 0.0 Protein kinase family protein (.1) Potri.002G075901 [exp] 296 / 5e-93 AT1G21270 507 / 5e-174 wall-associated kinase 2 (.1) Potri.001G040756 [exp] 290 / 1e-92 AT1G69730 448 / 3e-152 Wall-associated kinase family protein (.1) Potri.005G130900 [exp] 300 / 3e-92 AT2G23450 773 / 0.0 Protein kinase superfamily protein (.1.2) Potri.018G148432 [exp] 297 / 4e-91 AT1G16260 519 / 2e-175 Wall-associated kinase family protein (.1.2) Potri.018G148300 [exp] 295 / 2e-90 AT1G79680 511 / 7e-172 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1) Potri.007G034500 [exp] 293 / 1e-89 AT2G23450 731 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G076000 [exp] 293 / 3e-89 AT1G21270 631 / 0.0 wall-associated kinase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014387 [exp] 769 / 0 AT5G02070 493 / 8e-168 Protein kinase family protein (.1) Lus10032741 [exp] 298 / 3e-91 AT2G23450 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10008105 [exp] 293 / 1e-89 AT1G16120 419 / 3e-137 wall associated kinase-like 1 (.1) Lus10004504 [exp] 287 / 1e-87 AT1G16130 411 / 5e-134 wall associated kinase-like 2 (.1) Lus10034085 [exp] 273 / 3e-82 AT1G16130 526 / 5e-179 wall associated kinase-like 2 (.1) Lus10000741 [exp] 271 / 4e-81 AT2G23450 697 / 0.0 Protein kinase superfamily protein (.1.2) Lus10019657 [exp] 267 / 5e-80 AT2G23450 637 / 0.0 Protein kinase superfamily protein (.1.2) Lus10022432 [exp] 267 / 8e-80 AT1G18390 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10003063 [exp] 267 / 8e-80 AT1G16130 514 / 2e-173 wall associated kinase-like 2 (.1) Lus10016737 [exp] 265 / 5e-79 AT1G18390 544 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF13947 [poplar] [flax] GUB_WAK_bind Wall-associated receptor kinase galacturonan-binding
Representative CDS sequence Show only first row Show all	>Potri.006G118500.1 pacid=42769923 polypeptide=Potri.006G118500.1.p locus=Potri.006G118500 ID=Potri.006G118500.1.v4.1 annot-version=v4.1 ATGATCACAGCTGATCAACATATTGCAACCCCTCCTAATTTCATTGTTAGCTGTTTCTGTTTCCTGCTTCTCCTTAGTTGTTTTTGTTCTTCTCAGAAGA CTTGTCCCAACTGTGGTTCAATACAAGTTCCATATCCTTTGAGCACGTATTCCACCTGTGGAGATCCAAACTATCATCTTCGCTGCGATTCCCATTCTCA GAAACTTTATTTTGATGCCATGAATGGAAGTTCTTACCTTGTACTGAGGATCATGGCCTCATTCCAGCGCATGGTGGTGCAACCATCACCATGGGTGTCG GCGTCGAGCGCATGTGTTACTCAAGACATGGTAGTGAGCGAGGGCCTGCGATTAAACCAGACACTCCCTTTTAATCTCACTTTCTCTAACACTATCTTTC TTTACAACTGTTCACCTCGGCTCTTACTCACTCCTCTCAATTGCACTCCTTCTAGTCTCTGTCATCGCTACTTGGAGAGCTCAGGACACGTTGACAAAAA CCGAGCGCTTAAGTGTGCCGGCAGTCCTGATCTCAGCCCCTGCTGCACCTTTGTTGCAGGCGGAATGCCCTCAGCATACAGGATTCGGCTTCACAATTCA GGTTGTAAAGCCTTTAGAAGCATCCTAAGTTTGGATCCTGAAAAGCCTGCTAGTCAATGGGAAGAGGGAGTAGAAATTCAATGGGCTTCTCCGCCAGAAC CTATCTGTAACTCCAAGCTTGATTGTTCTGGACCCTCAAAGTGTTTACCTGCTGGAAGGAGTGGCCTCTCTCGCTGCCTTTGTAACAGGGGCTATTACTG GGACCGTGTTCGTGGAACTTGCTTTAGAAACAAGCATAAATCGAAAGCTGCAGGCCTCCTGGGTTTAGAGGTTTCAATAGGGGTAATCTGCTTTATCTCT TTGGGAGCAATAATAGTTTTAATTACTGTACGCAAGTCCTCAAAACGTTTTAATCAAGCAAAGTTAGACAAGGCAAGAGAAGACATGTTAAAATCAAGTG ATAGTGGGAAAAATGCTAGGATGTTCCAGTTGAAAGAGGTGAAGAAAGCAACAAATGGTTTCTCGCAAGATAGGATTTTGGGGAGTGGTGGATTTGGACA AGTCTATAAAGGTGAGCTTCAAGATGGAACTGTGGTGGCTGTTAAGTCAGCTAAAGTCGGAAACCTCAAAAGCACCCAACAAGTACTCAATGAAGTTGGA ATACTTTCACAAGTCAATCACAAGAACTTGGTTAGACTCTTGGGTTGCTGTGTGGAAGGTGAGCAACCTTTGATGATCTATGAATACATTTCTAATGGGA CTCTCTATGATCATTTACATGGAAATGGCTCCAGTACCTTTCTGGGTTGGAGAGAGAGGTTGAGAATTGCGTGGCAAACTGCTGAAGCGTTGGCCTATTT GCATTCCGGGACCTACACTCCCATCTATCACAGAGATGTCAAGTCAACAAATATACTACTAGATGACGAATTCAACGCTAAAGTCTCAGATTTTGGGCTC TCTAGACTGGCTCGTCCAGGGCTGAGCCATGTTTCGACTTGTGCTCAAGGAACATTAGGTTACTTGGATCCTGAGTACTATCGAAACTACCAGTTAACTG ACAAAAGTGATGTTTATAGTTATGGGGTTGTGCTGTTAGAGCTTCTCACTTCTCAAAAGGCCATCGACTTCTCACGAGATCAAGATGACGTAAACCTAGC TATCTATGTGAGCCAGGCAGCCAAAAATGGTGCAATCATGGAGGTTGTCGATCAACGGCTAACTGGCACGGAGCCATCAAGTAATGTACTGAACAGTGTA CAACTCTTCTCAGAGCTCGCCTTTGCCTGTCTAAGGGAGAAGAAAGCAGACAGACCTAGCATGAGAGAGGTTGTTCAACAACTTGAACGCATGGTCAAAA TAGAGCTAGAGGAAATTAGTCAAGGTTCTGAATTGTGA
AA sequence Show only first row Show all	>Potri.006G118500.1 pacid=42769923 polypeptide=Potri.006G118500.1.p locus=Potri.006G118500 ID=Potri.006G118500.1.v4.1 annot-version=v4.1 MITADQHIATPPNFIVSCFCFLLLLSCFCSSQKTCPNCGSIQVPYPLSTYSTCGDPNYHLRCDSHSQKLYFDAMNGSSYLVLRIMASFQRMVVQPSPWVS ASSACVTQDMVVSEGLRLNQTLPFNLTFSNTIFLYNCSPRLLLTPLNCTPSSLCHRYLESSGHVDKNRALKCAGSPDLSPCCTFVAGGMPSAYRIRLHNS GCKAFRSILSLDPEKPASQWEEGVEIQWASPPEPICNSKLDCSGPSKCLPAGRSGLSRCLCNRGYYWDRVRGTCFRNKHKSKAAGLLGLEVSIGVICFIS LGAIIVLITVRKSSKRFNQAKLDKAREDMLKSSDSGKNARMFQLKEVKKATNGFSQDRILGSGGFGQVYKGELQDGTVVAVKSAKVGNLKSTQQVLNEVG ILSQVNHKNLVRLLGCCVEGEQPLMIYEYISNGTLYDHLHGNGSSTFLGWRERLRIAWQTAEALAYLHSGTYTPIYHRDVKSTNILLDDEFNAKVSDFGL SRLARPGLSHVSTCAQGTLGYLDPEYYRNYQLTDKSDVYSYGVVLLELLTSQKAIDFSRDQDDVNLAIYVSQAAKNGAIMEVVDQRLTGTEPSSNVLNSV QLFSELAFACLREKKADRPSMREVVQQLERMVKIELEEISQGSEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G02070			Protein kinase family protein ...		Potri.006G118500 [exp]	0	1
AT1G78140			S-adenosyl-L-methionine-depend...		Potri.002G095100 [exp]	1.41	0.9251
					Potri.015G023750 [exp]	5.19	0.9228
AT4G18390	TCP	TCP2	TEOSINTE BRANCHED 1, cycloidea...		Potri.011G083100 [exp]	8.06	0.9357	PLCYC4.2
AT2G36430			Plant protein of unknown funct...		Potri.005G116100 [exp]	11.22	0.9079
AT1G52190			Major facilitator superfamily ...		Potri.018G040301 [exp]	14.45	0.9159
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Potri.014G072000 [exp]	15.87	0.9123	Pt-CYP704.1
					Potri.011G072616 [exp]	16.24	0.8883
AT2G31220	bHLH	bHLH010	basic helix-loop-helix (bHLH) ...		Potri.016G068500 [exp]	17.66	0.9028
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Potri.012G033500 [exp]	17.74	0.9118
AT2G47390			Prolyl oligopeptidase family p...		Potri.014G120600 [exp]	20.24	0.8941

Compare expression of checked genes

Potri.006G118500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.