Plant FIBer expression Database

Potri.006G118700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G03910 848 / 0 unknown protein
AT2G36815 91 / 8e-22 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G242900
[exp]
248 / 1e-75 AT1G03910 250 / 1e-76 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027731
[exp]
873 / 0 AT1G03910 875 / 0.0 unknown protein
Lus10035558
[exp]
867 / 0 AT1G03910 870 / 0.0 unknown protein
Lus10030000
[exp]
680 / 0 AT1G03910 713 / 0.0 unknown protein
Lus10027730
[exp]
321 / 2e-106 ND 328 / 7e-110
Lus10035559
[exp]
304 / 1e-100 ND 301 / 4e-100
Lus10021530
[exp]
255 / 1e-81 AT1G03910 253 / 2e-81 unknown protein
Lus10027605
[exp]
243 / 6e-77 AT1G03910 242 / 4e-77 unknown protein
Lus10035324
[exp]
105 / 3e-27 AT1G03910 116 / 4e-32 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09732 CactinC_cactus Cactus-binding C-terminus of cactin protein
PF10312 Cactin_mid Conserved mid region of cactin
Representative CDS sequence
>Potri.006G118700.2 pacid=42767337 polypeptide=Potri.006G118700.2.p locus=Potri.006G118700 ID=Potri.006G118700.2.v4.1 annot-version=v4.1
ATGGACAGCAAGAGGAGGAAAACGTTGTCGTCGTCTCGAAGAAGTAGAAAATCCTACGACTCTGAGTCCGGCTCGGAGTCCTTCTCTGATGACTCACGCG
ACTCATCACGGAGGAGGAGCTCCGGCAAGCGTCGGGAGCGTAGTCGTAGCCGCAGTCAAGGAAGAACTAATCGCCGGCACCGGACTTTGGATGATTCCAG
CGACAGTGGTCGCGACCGGAAGAGGAAGAATAGCTCTTCGCGGAAGATTAGTGAAGAAGAAATTGCAGAATATCTGGCCAAAAAAGCTCAGAGAAAGGCT
ATGAAAGCAGCAAAGAAATTGAAGGCGCAGTCCGTGTCTGGTTATTCTAATGATTCTAATCCGTTTGGTGATTCTAATCTCAACGAAAAATTTGTGTGGC
GGAAGAAAATCGAACGCGATGTTTCCCAAGGTGTGCCACTTGACATGTTTTCAGTTAAAGCTGAGAAAAAGAAACAGAGAGAAAGGATGGCGGAGATTGA
AAAGGTGAAAAAGAGAAGAGAGGAAAGGGCACTTGAAAAAGCACAGCATGAGGAAGAAATGGCAATCTTAGCCAGAGAACGTGCCAGGGCTGAATTCCAA
GACTGGGAGAAAAAAGAAGAGGAGTTTCATTTTGACCAAAGCAAAGTCAGGTCAGAGATTAGATTGCGTGAAGGGAGAGTGAAACCTATTGATGTCCTTT
CCAAACACCTCAATGTCTCAGATGATTTGGATATAGAAATAGATGAACCATATATGGTTTTCAAGGGGTTGACTGCCAAAGAGATGGAAGAGCTTCACGA
TGACATCAAAATGCATTTGGATATGGATAGAAAAACTCAGACACATATTGATTATTGGGAGGCTCTTTTGGTGGTTTGTAATTGGGAGCTGGCTGAAGCT
CGGAAAAAGGATGCACTGGATCGGGCTAGGGTCCGTGGGGAGCAACCACCTTCCGAGTTTCTTGCAGAAGAAAGAGGTCTGCATTCCAGTATTGAAGCAG
ATGTCAGGAATCTCTTGGAAGGGAAGACTTCAAATGAGCTTGAAGCATTAAGGTCCCAAATTGAGTCACAAATGAGCTCAGGCACAGCGAAAGTGGTTGA
GTATTGGGAGGCTGTTCTTAAACGACTTCAGATATACAAGGCAAAGGCTTGTTTGAAGGAAATTCATGCTAAGATGTTACGCAAGCATTTGCAACGCCTT
GAGCCTCCGTTGAAGGGTGATGATATGTTAGAAAATGATAACAGTTTAAGGTTTAGTGAGGAGGATATCGAGGATGATGATACCCAAGCAGATGCTGAAA
CTTTCTCTCCAGAACTTGTATTGGAGGAGGAGACTCATGAGGCAGAGGAGGCTGGATCATTTTCACCTGAATTATTGCATGGTGATGAAAATGAAGAAGC
AATTGATCCTGAAGAGGATAGGGCTATACTGGAAAGGAAACGAATGGCTGTTGTAGAGGAACAACAAAGACGAATTCAAGAAGCTATGGCATCAAAGCCC
CCTCCTTCAGAAGATAACTTGGAGCTGAAGGCCATGAAAGCTATGGGAGCCATGGAGGAAGGTGATGCAGTATTTGGCTCTGGTGCTGAAGTGAATCTAG
ATTCACAGGTATATTGGTGGCATGACAAGTACCGACCAAGAAAGCCCAAGTATTTCAATCGTGTTCACACCGGATATGAGTGGAACAAATACAACCAGAC
TCACTATGATCATGACAACCCTCCTCCTAAGATTGTGCAAGGATACAAATTCAATATCTTTTACCCAGACCTTGTTGACAAGATAAAGGCTCCAACTTTT
ACCATCGAGAAGGACGGGGACAATGGTGAGACTTGCATTATCAGGTTCCATGCAGGGCCACCTTATGAAGATATAGCATTCAAGATCGTAAATAAAGAAT
GGGAATATTCTCATAAGAAGGGGTTCAAGTGCACATTCGAACGTGGAATTTTGCATGTTTACTTCAACTTCAAACGCTACCGCTACCGTCGATGA
AA sequence
>Potri.006G118700.2 pacid=42767337 polypeptide=Potri.006G118700.2.p locus=Potri.006G118700 ID=Potri.006G118700.2.v4.1 annot-version=v4.1
MDSKRRKTLSSSRRSRKSYDSESGSESFSDDSRDSSRRRSSGKRRERSRSRSQGRTNRRHRTLDDSSDSGRDRKRKNSSSRKISEEEIAEYLAKKAQRKA
MKAAKKLKAQSVSGYSNDSNPFGDSNLNEKFVWRKKIERDVSQGVPLDMFSVKAEKKKQRERMAEIEKVKKRREERALEKAQHEEEMAILARERARAEFQ
DWEKKEEEFHFDQSKVRSEIRLREGRVKPIDVLSKHLNVSDDLDIEIDEPYMVFKGLTAKEMEELHDDIKMHLDMDRKTQTHIDYWEALLVVCNWELAEA
RKKDALDRARVRGEQPPSEFLAEERGLHSSIEADVRNLLEGKTSNELEALRSQIESQMSSGTAKVVEYWEAVLKRLQIYKAKACLKEIHAKMLRKHLQRL
EPPLKGDDMLENDNSLRFSEEDIEDDDTQADAETFSPELVLEEETHEAEEAGSFSPELLHGDENEEAIDPEEDRAILERKRMAVVEEQQRRIQEAMASKP
PPSEDNLELKAMKAMGAMEEGDAVFGSGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKIKAPTF
TIEKDGDNGETCIIRFHAGPPYEDIAFKIVNKEWEYSHKKGFKCTFERGILHVYFNFKRYRYRR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G03910 unknown protein Potri.006G118700
[exp]
0 1
AT1G36990 unknown protein Potri.005G172100
[exp]
1.00 0.8758
AT5G48340 unknown protein Potri.014G174300
[exp]
3.31 0.8482
AT1G36990 unknown protein Potri.002G089100
[exp]
3.74 0.8719
AT5G04670 Enhancer of polycomb-like tran... Potri.008G024300
[exp]
5.65 0.8623
AT4G04885 PCFS4 PCF11P-similar protein 4 (.1) Potri.017G017800
[exp]
6.92 0.8482
AT1G01350 C3HZnF Zinc finger (CCCH-type/C3HC4-t... Potri.014G097300
[exp]
7.74 0.8491
AT1G58470 XF41, ATRBP1 RNA-binding protein 1 (.1) Potri.002G115000
[exp]
8.66 0.8633
Potri.004G111050
[exp]
9.38 0.8513
AT3G62240 C2H2ZnF RING/U-box superfamily protein... Potri.002G189700
[exp]
9.48 0.8314
AT2G03820 nonsense-mediated mRNA decay N... Potri.017G137500
[exp]
11.40 0.8383

Potri.006G118700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.