Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36670 586 / 0 Eukaryotic aspartyl protease family protein (.1.2) AT5G22850 531 / 0 Eukaryotic aspartyl protease family protein (.1) AT1G08210 467 / 2e-161 Eukaryotic aspartyl protease family protein (.1) AT1G05840 268 / 3e-84 Eukaryotic aspartyl protease family protein (.1) AT5G36260 262 / 7e-82 Eukaryotic aspartyl protease family protein (.1) AT1G65240 262 / 7e-82 Eukaryotic aspartyl protease family protein (.1) AT3G02740 255 / 4e-79 Eukaryotic aspartyl protease family protein (.1) AT3G42550 151 / 1e-40 Eukaryotic aspartyl protease family protein (.1) AT3G25700 150 / 3e-40 Eukaryotic aspartyl protease family protein (.1.2) AT5G43100 143 / 1e-36 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G096700 [exp] 850 / 0 AT2G36670 578 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.001G213600 [exp] 553 / 0 AT5G22850 704 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.009G001700 [exp] 549 / 0 AT5G22850 711 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.019G054900 [exp] 269 / 2e-84 AT3G02740 572 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G146400 [exp] 256 / 2e-79 AT1G05840 758 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G144600 [exp] 150 / 4e-39 AT5G43100 729 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G020200 [exp] 140 / 1e-35 AT5G43100 807 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.008G115900 [exp] 127 / 1e-31 AT3G25700 530 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.007G099200 [exp] 124 / 8e-31 AT4G33490 521 / 0.0 Eukaryotic aspartyl protease family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027732 [exp] 619 / 0 AT2G36670 634 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10035556 [exp] 608 / 0 AT2G36670 623 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10014391 [exp] 605 / 0 AT2G36670 598 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10021397 [exp] 494 / 5e-172 AT5G22850 677 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10005356 [exp] 484 / 7e-168 AT5G22850 669 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041103 [exp] 285 / 1e-90 AT3G02740 548 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10036430 [exp] 282 / 2e-89 AT3G02740 550 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10020201 [exp] 273 / 5e-86 AT5G36260 550 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10027001 [exp] 267 / 1e-83 AT5G36260 546 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021485 [exp] 258 / 7e-80 AT1G05840 723 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF14541 [poplar] [flax] TAXi_C Xylanase inhibitor C-terminal
Representative CDS sequence Show only first row Show all	>Potri.006G118800.2 pacid=42770681 polypeptide=Potri.006G118800.2.p locus=Potri.006G118800 ID=Potri.006G118800.2.v4.1 annot-version=v4.1 ATGCGGGGTTTATGGCCCCCTTTCGTCGTCATTATACTAGTATCATTCATGTTTGTGTCGGCGGTTTACTGTGCTAGTCTTCTCCATCTGGAGAGGGCTT TTCCTTTAAACAACCACGGTCTTGAACTCCATCAACTCAGAGCTCGAGACCGACTCAGACACGCCCGTCTTTTACAAGGCTTTGTTGGTGGCGTTGTCGA CTTCTCTGTCCAAGGTTCCTCCGATCCTTACCTCGTCGGGGTCACAGGAACTTCAGAGACCTTACTTTATTTTACAAAAGTGAAATTGGGCTCTCCTCCT AGAGAATTCAATGTGCAGATTGATACTGGAAGTGATGTCTTGTGGGTCTGCTGCAATTCCTGCAACAACTGCCCGCGTACTAGTGGTCTTGGAATTCAGC TCAATTTCTTTGATTCCAGCAGCTCATCAACTGCTGGGCAGGTCCGCTGTTCAGACCCGATCTGCACTTCAGCAGTTCAAACCACAGCAACCCAATGCTC TTCTCAGACTGATCAGTGCAGTTATACATTCCAATATGGAGATGGAAGTGGGACATCAGGCTATTATGTCTCCGATACACTTTATTTTGATGCTATTTTG GGGCAGTCACTGATCGATAACTCCTCAGCTCTCATTGTCTTTGGGTGCAGTGCTTACCAGTCCGGGGACCTGACTAAGACTGATAAAGCAGTTGATGGGA TTTTTGGATTTGGCCAGGGAGAACTCTCTGTTATATCACAATTATCGACCCGAGGGATAACACCCAGAGTATTCTCGCATTGCTTGAAAGGAGACGGCAG TGGAGGTGGTATACTGGTTCTTGGTGAGATTCTGGAGCCAGGCATCGTTTATAGTCCACTTGTCCCGTCACAGCCTCATTATAATTTAAATCTACTAAGC ATTGCTGTTAATGGGCAATTGTTACCAATTGATCCGGCAGCATTTGCAACATCAAATAGCCAAGGAACAATTGTTGACTCTGGAACAACTTTGGCGTACC TAGTGGCGGAAGCTTATGATCCTTTTGTTAGTGCTGTGAACGCCATTGTCTCGCCATCTGTTACTCCTATCACATCTAAAGGAAACCAGTGTTATCTTGT CTCCACCAGTGTATCTCAGATGTTCCCCCTGGCCAGTTTTAACTTTGCTGGGGGTGCATCCATGGTGTTAAAACCAGAAGACTATCTTATACCTTTTGGT TCCAGTGAGGGTGGTTCTGCGATGTGGTGCATTGGTTTTCAGAAAGTTCAAGGAGTAACTATCCTAGGAGATCTTGTTCTGAAAGATAAGATTTTTGTAT ATGATTTAGTAAGACAGCGGATTGGTTGGGCTAACTATGACTGCTCCTTATCTGTAAATGTTTCGGTTACTTCTAGCAAGGACTTCATCAATGCAGGACA GCTGAGTGTGAGCAGCTCGTCAAGGGACATCATGCTCTTTGAGCTGCTACCTCTGACCGTTATGGTTTTCTTAATGCACATATTATTGTTGGAGTTCCAA TTTTTGTAA
AA sequence Show only first row Show all	>Potri.006G118800.2 pacid=42770681 polypeptide=Potri.006G118800.2.p locus=Potri.006G118800 ID=Potri.006G118800.2.v4.1 annot-version=v4.1 MRGLWPPFVVIILVSFMFVSAVYCASLLHLERAFPLNNHGLELHQLRARDRLRHARLLQGFVGGVVDFSVQGSSDPYLVGVTGTSETLLYFTKVKLGSPP REFNVQIDTGSDVLWVCCNSCNNCPRTSGLGIQLNFFDSSSSSTAGQVRCSDPICTSAVQTTATQCSSQTDQCSYTFQYGDGSGTSGYYVSDTLYFDAIL GQSLIDNSSALIVFGCSAYQSGDLTKTDKAVDGIFGFGQGELSVISQLSTRGITPRVFSHCLKGDGSGGGILVLGEILEPGIVYSPLVPSQPHYNLNLLS IAVNGQLLPIDPAAFATSNSQGTIVDSGTTLAYLVAEAYDPFVSAVNAIVSPSVTPITSKGNQCYLVSTSVSQMFPLASFNFAGGASMVLKPEDYLIPFG SSEGGSAMWCIGFQKVQGVTILGDLVLKDKIFVYDLVRQRIGWANYDCSLSVNVSVTSSKDFINAGQLSVSSSSRDIMLFELLPLTVMVFLMHILLLEFQ FL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36670			Eukaryotic aspartyl protease f...		Potri.006G118800 [exp]	0	1
AT4G16650			O-fucosyltransferase family pr...		Potri.001G157400 [exp]	1.73	0.8628
AT5G64030			S-adenosyl-L-methionine-depend...		Potri.007G104000 [exp]	5.29	0.8694
AT3G14450		CID9	CTC-interacting domain 9 (.1)		Potri.001G377500 [exp]	6.32	0.8579
AT1G32930			Galactosyltransferase family p...		Potri.001G450200 [exp]	7.21	0.8795
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Potri.017G134900 [exp]	7.74	0.8583	TMK1.1
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Potri.003G212700 [exp]	10.39	0.8507	Pt-MOD1.2
AT4G32140			EamA-like transporter family (...		Potri.018G024700 [exp]	15.29	0.8556
AT5G17310		AtUGP2, UGP2	UDP-glucose pyrophosphorylase ...		Potri.017G144700 [exp]	16.09	0.8541
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Potri.006G010500 [exp]	23.32	0.8335	Pt-GDI1.1
AT3G61415		ASK21	SKP1-like 21 (.1.2)		Potri.002G160600 [exp]	25.03	0.8450

Compare expression of checked genes

Potri.006G118800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.