Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53110 646 / 0 LOS4 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G72730 245 / 4e-76 DEA(D/H)-box RNA helicase family protein (.1) AT3G19760 243 / 2e-75 EIF4A-III eukaryotic initiation factor 4A-III (.1) AT3G13920 235 / 2e-72 RH4, TIF4A1, EIF4A1 eukaryotic translation initiation factor 4A1 (.1.2.3.4) AT1G54270 233 / 1e-71 EIF4A-2 eif4a-2 (.1.2) AT1G51380 212 / 8e-64 DEA(D/H)-box RNA helicase family protein (.1) AT3G61240 213 / 6e-63 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT2G45810 211 / 5e-62 DEA(D/H)-box RNA helicase family protein (.1) AT4G00660 207 / 7e-61 ATRH8 RNAhelicase-like 8 (.1.2) AT5G11170 192 / 9e-56 DEAD/DEAH box RNA helicase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G093900 [exp] 249 / 8e-78 AT3G19760 693 / 0.0 eukaryotic initiation factor 4A-III (.1) Potri.007G070000 [exp] 245 / 2e-76 AT3G19760 689 / 0.0 eukaryotic initiation factor 4A-III (.1) Potri.001G197900 [exp] 239 / 8e-74 AT3G13920 786 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.003G043700 [exp] 238 / 2e-73 AT3G13920 791 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.006G225700 [exp] 237 / 5e-73 AT3G13920 797 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.018G061050 [exp] 233 / 1e-71 AT3G13920 793 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.014G081100 [exp] 210 / 1e-61 AT4G00660 822 / 0.0 RNAhelicase-like 8 (.1.2) Potri.002G157500 [exp] 206 / 1e-60 AT4G00660 817 / 0.0 RNAhelicase-like 8 (.1.2) Potri.018G028600 [exp] 192 / 5e-56 AT5G11170 807 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023886 [exp] 752 / 0 AT3G53110 606 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10014393 [exp] 751 / 0 AT3G53110 603 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017407 [exp] 245 / 5e-76 AT3G19760 728 / 0.0 eukaryotic initiation factor 4A-III (.1) Lus10010206 [exp] 234 / 8e-72 AT3G19760 717 / 0.0 eukaryotic initiation factor 4A-III (.1) Lus10017153 [exp] 205 / 8e-61 AT3G13920 785 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10017804 [exp] 206 / 2e-60 AT4G00660 854 / 0.0 RNAhelicase-like 8 (.1.2) Lus10037620 [exp] 202 / 6e-60 AT3G13920 786 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10006878 [exp] 202 / 7e-60 AT3G13920 787 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10014783 [exp] 203 / 5e-59 AT4G00660 853 / 0.0 RNAhelicase-like 8 (.1.2) Lus10030377 [exp] 198 / 3e-57 AT4G00660 850 / 0.0 RNAhelicase-like 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] P-loop_NTPase PF04851 [poplar] [flax] ResIII Type III restriction enzyme, res subunit
Representative CDS sequence Show only first row Show all	>Potri.006G119000.1 pacid=42767414 polypeptide=Potri.006G119000.1.p locus=Potri.006G119000 ID=Potri.006G119000.1.v4.1 annot-version=v4.1 ATGGCGGAAGTTACTGAAACCACCGCCGCTTCCAGCTCCGAGGGCCAAAAACCGGCGGTGCCGGAGACTAAAAGATTATGGAGCGACGAAGTAGATGACG AAGAGGTTCAGCCGAGCGCAACAGAGGAAAAAGCTGTCTTGGAGCTAAACGTTGACGCATTAGCTATCGACGAGAACACGAAAGTCAACAAGTTCCTTGA CGAACCTGAAGACTCTAGAATACAAGCCGTTACAACAGGGGATACACCATACACATCAGCATCCACATTTGAAGATTTGAACCTGTCCCCGGAGCTACTC AAGGGTTTGTACGTGGAGATGAAATTCCAGAAGCCTAGTAAGATTCAAGCTATTAGTCTTCCAATGATCATGACTCCTCCATATAAAGATTTGATTGCTC AGGCACATAATGGTTCTGGTAAGACCACTTGTTTTGTGCTTGGCATGTTGAGTCGTGTTGATCCAAAACAACAAAGTCCCCAAGCACTCTGCATTTGCCC TACAAGAGAGTTATCGATTCAGAATATGGAAGTTCTTCAGAAGATGGGAAAGTACACTGGAATAAGTTCAGAATGTGCGGTGCCCATAGAAAGCAGAAAT AATGATAGATCCAGATACCGACCTCCAATATCTGCACAAGTGGTGATTGGGACTCCTGGTACGATAAAGAGATTGATGTCGCAAAAGAAATTGGGTGTTA ATGATATGAAGGTTCTTGTTTTTGATGAAGCTGATCACATGCTGGCCAAGGATGGCTTTCAAGACGATTCCTTGAGGATAATGAAGGACATTCAAAGATT CAATTCTCATTGCCAGGTTCTTCTGTTCTCTGCCACTTTTGATGAGACTGTTAAGAACTTTGTGTCAAAGGTTGTGAAAGATTACAATCAACTTTTTGTA AAGAAAGAAGATCTGTCATTAGAATCATTGAAGCAGTATAAGGTGATTCTTCCTGATGAACTTGCCAAGATTAGAGTAGTAAAAGATAGGATTCTTGAGC TGGGAGAGAACATAGGCCAGATCATTATATTTGTCAACACAAAGCGCAGCGCCAGCATGCTGCACACTTCCCTTGTGGAATTAGGCTATGAAGTCACTAC CATTCATGGCGCACTTAATCTTGAAGACCGAGATAAAATAGTCAAAGAATTCAAGGATGGATTGACTCAAGTTCTCATATCAACTGATGTTCTCGCCCGA GGTTTTGACCAACAACAGGTTAATTTGGTAATCAATTATGATCTCCCAGTGAAGTATGAAAATCAATCAGAGCCTCATTATGAGGTCTACTTGCACAGGA TTGGTAGGGCTGGGCGTTTTGGCCGCAAAGGGGCTGTGTTTAATTTCATAATGACTGACCATGATTTGATGATCATGAGGAAGATAGAGAGCTACTTCAA TAGTCCAGTAGCTGAGATACCATCATGGGGCAGTGAAGAGGGCTTCAAGGTTGCTCTCAAGGAAGCTGGTTTGCTGTGA
AA sequence Show only first row Show all	>Potri.006G119000.1 pacid=42767414 polypeptide=Potri.006G119000.1.p locus=Potri.006G119000 ID=Potri.006G119000.1.v4.1 annot-version=v4.1 MAEVTETTAASSSEGQKPAVPETKRLWSDEVDDEEVQPSATEEKAVLELNVDALAIDENTKVNKFLDEPEDSRIQAVTTGDTPYTSASTFEDLNLSPELL KGLYVEMKFQKPSKIQAISLPMIMTPPYKDLIAQAHNGSGKTTCFVLGMLSRVDPKQQSPQALCICPTRELSIQNMEVLQKMGKYTGISSECAVPIESRN NDRSRYRPPISAQVVIGTPGTIKRLMSQKKLGVNDMKVLVFDEADHMLAKDGFQDDSLRIMKDIQRFNSHCQVLLFSATFDETVKNFVSKVVKDYNQLFV KKEDLSLESLKQYKVILPDELAKIRVVKDRILELGENIGQIIIFVNTKRSASMLHTSLVELGYEVTTIHGALNLEDRDKIVKEFKDGLTQVLISTDVLAR GFDQQQVNLVINYDLPVKYENQSEPHYEVYLHRIGRAGRFGRKGAVFNFIMTDHDLMIMRKIESYFNSPVAEIPSWGSEEGFKVALKEAGLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53110		LOS4	LOW EXPRESSION OF OSMOTICALLY ...		Potri.006G119000 [exp]	0	1
AT1G79920		AtHsp70-15	heat shock protein 70-15, Heat...		Potri.001G180100 [exp]	3.46	0.8333	Pt-HSP91.2
AT4G15415		ATB'GAMMA, ATB'...	Protein phosphatase 2A regulat...		Potri.002G226200 [exp]	5.19	0.7571
AT2G34250			SecY protein transport family ...		Potri.001G387600 [exp]	7.48	0.7781
AT1G09780		iPGAM1	2,3-biphosphoglycerate-indepen...		Potri.016G142900 [exp]	12.48	0.7917	APGM.2
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.008G194900 [exp]	13.92	0.8313	Pt-POR1.1
AT1G09210		AtCRT1b	calreticulin 1b (.1)		Potri.013G009500 [exp]	14.79	0.8163
AT3G61790			Protein with RING/U-box and TR...		Potri.003G198600 [exp]	15.29	0.7749
AT5G42020		BIP2, BIP	luminal binding protein, Heat ...		Potri.001G087500 [exp]	16.09	0.7913	Pt-BIP.2
AT3G52300		ATPQ	"ATP synthase D chain, mitocho...		Potri.008G043800 [exp]	22.44	0.7949
AT5G61790		CNX1, ATCNX1	calnexin 1 (.1)		Potri.015G109200 [exp]	25.45	0.7479	CNX1.1

Compare expression of checked genes

Potri.006G119000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.