Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53120 269 / 6e-92 VPS37-1 Modifier of rudimentary (Mod(r)) protein (.1) AT2G36680 252 / 4e-85 Modifier of rudimentary (Mod(r)) protein (.1), Modifier of rudimentary (Mod(r)) protein (.2), Modifier of rudimentary (Mod(r)) protein (.3), Modifier of rudimentary (Mod(r)) protein (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G097000 [exp] 322 / 1e-112 AT3G53120 249 / 3e-84 Modifier of rudimentary (Mod(r)) protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014395 [exp] 269 / 2e-91 AT2G36680 280 / 4e-96 Modifier of rudimentary (Mod(r)) protein (.1), Modifier of rudimentary (Mod(r)) protein (.2), Modifier of rudimentary (Mod(r)) protein (.3), Modifier of rudimentary (Mod(r)) protein (.4) Lus10023888 [exp] 265 / 5e-89 AT2G36680 266 / 1e-89 Modifier of rudimentary (Mod(r)) protein (.1), Modifier of rudimentary (Mod(r)) protein (.2), Modifier of rudimentary (Mod(r)) protein (.3), Modifier of rudimentary (Mod(r)) protein (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0596 [poplar] [flax] VPS23_C PF07200 [poplar] [flax] Mod_r Modifier of rudimentary (Mod(r)) protein
Representative CDS sequence Show only first row Show all	>Potri.006G119200.1 pacid=42770501 polypeptide=Potri.006G119200.1.p locus=Potri.006G119200 ID=Potri.006G119200.1.v4.1 annot-version=v4.1 ATGTTCAAGTTCTGGGGTTCTCAGGAACAACAAGGGCAGCCAGGTCCACAAGAGGTTGCTCAAGGTCCAGCACAATCTTGGTACCCTCCATCTGTAGTTG GTTCCCCATCTTCCTCACGGCCTGCAACTCCAACTAGTACTAGCTCTTCCACTTCCCACAGTTTCCAAAGCCCTGCAGAACGCCCACTCTCTCCTTCACC TGCTGAAGCTGCTGCCTTTATCACTCTTTTGAAGGACAAAAGTGTTGATGAATTACGGAAGCTATTGTCTGACAAGGATGCATACCATCAATTTTTACTC TCACTTGACCAGGTTAAAATTCAAAATAATATAAGAGATGAGCTTCGCAAGGAAACTCTGCAGCTTGCGAGAGAGAACTTGGAGAAAGAGCCACGCATAA TGGAGCTTAGAAACCAATGCAGGATAATACGGACAACTGAGCTGGCTGCTGCTAAAGAAAAACTAAACGAGCTGGAAAGACAGAAAGAAGAGTTGTTGAG GTCCTGCTCTCCTGCCTCCCTCCTGCAAAGGCTACAAGAGGCAATGAATAAGACAGACGAGGAATCTGAAGCCCTCCACAGGCAGTTCCTTGATAAGGAG ATAGATCTTGGGTCTTTTGTGCTGAAGTACAAAAAACTCCGTACCACCTATCACAAACGAGCACTTATCCATCTTGCAGCAAAAGCATCTCCAACTGCTT GA
AA sequence Show only first row Show all	>Potri.006G119200.1 pacid=42770501 polypeptide=Potri.006G119200.1.p locus=Potri.006G119200 ID=Potri.006G119200.1.v4.1 annot-version=v4.1 MFKFWGSQEQQGQPGPQEVAQGPAQSWYPPSVVGSPSSSRPATPTSTSSSTSHSFQSPAERPLSPSPAEAAAFITLLKDKSVDELRKLLSDKDAYHQFLL SLDQVKIQNNIRDELRKETLQLARENLEKEPRIMELRNQCRIIRTTELAAAKEKLNELERQKEELLRSCSPASLLQRLQEAMNKTDEESEALHRQFLDKE IDLGSFVLKYKKLRTTYHKRALIHLAAKASPTA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53120		VPS37-1	Modifier of rudimentary (Mod(r...		Potri.006G119200 [exp]	0	1
AT2G24360			Protein kinase superfamily pro...		Potri.018G001800 [exp]	4.69	0.7974
AT1G34750			Protein phosphatase 2C family ...		Potri.002G097200 [exp]	6.70	0.8008
AT5G63970			Copine (Calcium-dependent phos...		Potri.007G103700 [exp]	6.92	0.7919
AT4G39080		VHA-A3	vacuolar proton ATPase A3 (.1)		Potri.004G160400 [exp]	10.48	0.7814
AT4G04210		PUX4	plant UBX domain containing pr...		Potri.014G157200 [exp]	13.03	0.7820
AT3G10960		ATAZG1	AZA-guanine resistant1 (.1)		Potri.013G083300 [exp]	22.44	0.7852
AT4G23010		ATUTR2, UTR2	UDP-galactose transporter 2 (....		Potri.001G111000 [exp]	24.18	0.7957
AT1G43700	bZIP	SUE3, AtbZIP51,...	sulphate utilization efficienc...		Potri.002G069500 [exp]	24.33	0.7944
AT3G08505	C3HZnF		zinc finger (CCCH-type/C3HC4-t...		Potri.004G134400 [exp]	26.15	0.7652
AT3G12490		ATCYS6, ATCYSB	ARABIDOPSIS THALIANA PHYTOCYST...		Potri.016G030900 [exp]	28.72	0.7361

Compare expression of checked genes

Potri.006G119200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.